Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26n16
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 32 0.075
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 30 0.30
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 29 0.92
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 28 1.6
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 28 1.6
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.8
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 27 3.7
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 26 6.5
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 26 6.5
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.5
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 6.5
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 6.5
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 26 6.5
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 25 8.6
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 32.3 bits (70), Expect = 0.075
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 440 WVCHGRKCLTSHACTCPLMDAVCLECERGVW--EHGGRV--FRCCF 565
++C G CL T P VC +C R + E G+V RCCF
Sbjct: 17 FICPGCNCLPDWPVTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCF 62
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 518 ERGVWEHGGRVFRCCFCQG-FLCEDDQFEHQASCQVLES-ETYKCQSCNRIGQYSCLR 685
E VWE F C FC F C D + H C+ + + Y+ + N + Y+C++
Sbjct: 47 EEEVWEDEVHEFCCLFCDSTFTCLKDLWSH---CKEAHNFDFYQVKQQNNLDFYACIK 101
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 28.7 bits (61), Expect = 0.92
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 596 FEHQASCQVLESETYKCQSCNRIGQYSCLRCKTCF 700
FEH + L S + C +C +I + C CF
Sbjct: 46 FEHNNNSPTLRSSSVACNTCLKIIRNDSFHCTKCF 80
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +3
Query: 471 PMRAPALSWMPCAWSAKEVYGSTVAGFSGAVSAKDFCVKMTSLSIR--PHVKFWNRKPTS 644
P P+L W+ W +E+ + G A A CV + L ++ P +N+ S
Sbjct: 379 PPSKPSLKWLATKWLRREIQKAGALGHDSAEDAL-ACVDLLKLKVKNGPAFGLFNQDFES 437
Query: 645 VNH 653
+ H
Sbjct: 438 IFH 440
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +2
Query: 125 PKKKTGQRKKAEKQKLRQKEIRAAREHVDLAQHPCNVAMECDKCQKKQKTRAFCYFCQAV 304
P + G K ++L ++ + AA+E + L + A + + + ++K +AF Y C+ +
Sbjct: 266 PPETAGIGKPENYEELDKEYVDAAKEFIRLTREWIYAAGKPQEAEIEEKRKAFKYECKKL 325
Query: 305 QR 310
R
Sbjct: 326 WR 327
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.1 bits (57), Expect = 2.8
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 115 QEHAKEKDRST*KSRETEVAPERNTGRSRTCRFSSTSL*RCYGVRQMSEKTEDTCILLLL 294
Q H E DR+ SR +VAP + R SST L +S+ + + + L
Sbjct: 98 QNHLTENDRNFGTSRLDDVAPNADGVRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLA 157
Query: 295 SSCTE--TPNMC 324
+ E TP +C
Sbjct: 158 KTQPERATPEVC 169
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 26.6 bits (56), Expect = 3.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +2
Query: 644 CQSCNRIGQYSCLRCKTCFC 703
C C G+Y+C C T +C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Frame = -2
Query: 481 ARMGCETFSTMTHPCLTEV--TY--STH 410
A CET T+ HPC+ + TY STH
Sbjct: 65 ADRACETMKTLRHPCIIKYLSTYKSSTH 92
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 230 YRDVELNLHVRERPVFLSGATSV 162
YRDV+L+L E+PV L T V
Sbjct: 378 YRDVDLSLETDEKPVKLMVRTEV 400
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +2
Query: 260 KKQKTRAFCYFCQAVQRLPTCAHCGKVKCMLKSGDCVIRHPG 385
KK ++R C C+++++ H +C+ C+ + PG
Sbjct: 13 KKPRSRYGCLICRSMRKKCDEVHPQCGRCLKAGKQCIWKQPG 54
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 484 GARMGCETFSTMTHPCLTEVTYSTHHSH 401
G C+ FS + HPC + + H H
Sbjct: 175 GTVSSCDDFSYLVHPCRVRFSQWSKHLH 202
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 25.8 bits (54), Expect = 6.5
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +2
Query: 167 KLRQKEIRAAREHVDLAQHPCNVAMECDKCQKKQKT--RAFCYFCQAVQRLPTCAHCGKV 340
++ + IR AREH + Q + CD +K + R + + ++R G V
Sbjct: 610 EMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQSWDAKRLERFEN-IKAGSV 668
Query: 341 K---CMLKSGDCVIRHPGVYNTGMGMVGAICD 427
+ K+ D VI G TG+ +G +CD
Sbjct: 669 LSGIVLQKTEDSVIVDLGDKVTGVITLGQLCD 700
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -2
Query: 334 PTVSTCWESLYSLTEVAKC--TCLLFF 260
P+VST W L+ L ++ +C +C+ +F
Sbjct: 42 PSVSTLWRLLFELQKMIECEPSCVEYF 68
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 360 EIVLLDIQVFTTREWEWWVLYVTSVRHGCVMVENVSHPMRAPAL 491
EIV++ + T R W + S+ V VENV HP +P L
Sbjct: 47 EIVIVMSDIGTERRWN-----LQSLPWQHVTVENVQHPASSPNL 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,537
Number of Sequences: 5004
Number of extensions: 75296
Number of successful extensions: 254
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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