Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26n15
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 29 0.84
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 1.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.1
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 28 1.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 4.5
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 4.5
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 5.9
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 25 7.8
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 7.8
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 7.8
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.84
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -1
Query: 665 DSIQSKALRIITGAMKSSPVTALQVECV--DPPLHLRRQYLSDKFVFKSLQIQNNHIITK 492
DS++SK + +T S +T L + + D P L QY+ K LQI N +
Sbjct: 266 DSLKSKDSKPLT---MSEVLTQLPEDDIPFDDPFDLTSQYVKVKLKMLRLQIANKKNSEE 322
Query: 491 LKTLNELIES 462
TLN +ES
Sbjct: 323 FSTLNLQLES 332
>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 467 ESSSFWKHKRLPCLIISYRKYLSIQTPTHHSHI-FPLFCVNYKALIL 330
+S+ WK +P II+Y+ Q H + I FP F Y LI+
Sbjct: 54 QSTHAWKMHCMPTEIIAYQPIPVFQRLLHSNDIYFPYFQTRYTTLIM 100
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 392 TPTHHSHIFPLFCVNYKALILKPDIHLDMGVS 297
+P+ ++ IF + C N K++ DIH+ +GVS
Sbjct: 843 SPSRYAGIFDILC-NIKSIATSLDIHICLGVS 873
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -1
Query: 659 IQSKALRIITGAMKSSPVTALQ-VECVDPPLHLRRQYLSDKFVFKSLQIQNNHIITK 492
I+ ++ G +KSS L +E V+ + +LS+K FKSL++ NH +TK
Sbjct: 60 IRPAGTSVLLGRVKSSKANQLVGIEHVEGSRYALI-FLSEKLDFKSLKVIANHQLTK 115
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 4.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 251 QDWNDYNHIYTDASKHP 201
+DWN++N IY +HP
Sbjct: 310 EDWNEFNDIYKLIIRHP 326
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 4 NFARACKALFESVSINVFFILNIKMYSMALYI---PKHSPVNTDVSDGNFIFSTI 159
N R+C+ L +S +F I+ I YI P H+ N+++ GN F+T+
Sbjct: 663 NRPRSCRVLL-FISTALFSIIMIYFVFCVFYISLIPLHNSDNSEIVLGNNYFTTL 716
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/86 (23%), Positives = 43/86 (50%)
Frame = -1
Query: 557 QYLSDKFVFKSLQIQNNHIITKLKTLNELIESSSFWKHKRLPCLIISYRKYLSIQTPTHH 378
+++++ F++ + + N++I +T SSF+ +P R YL+ +
Sbjct: 528 KWVAETFIYTTTAARLNYLIGD-QTYKIANVESSFYLLGYIPR---DDRIYLTDRDMNVV 583
Query: 377 SHIFPLFCVNYKALILKPDIHLDMGV 300
S+ F L + Y++L+LK D+ G+
Sbjct: 584 SYSFNLAIIEYQSLVLKGDLEAAQGL 609
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 60 YFKYQNVFYGLVYSKTFTSEH*C 128
YF+Y N ++ + Y K F E+ C
Sbjct: 185 YFRYINCWWPVFYEKDFMDEYEC 207
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 641 RIITGAMKSSPVTALQVECVDPPLHLRRQYLSDK 540
R+I + + +TA+ +EC+ P++ R L+DK
Sbjct: 942 RVIQVFIYACILTAVIIECIATPIYERDHLLNDK 975
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 8 LQEPVKHSLNRLVLMFSLF*ISKCILWPCIFQNIHQ*TLMFQMVILSFQLFLIAN 172
L++PV H L V FS+ +C+ W +F NI L + I +F L+A+
Sbjct: 358 LEDPV-HRL--FVTAFSV--CCECLAWTSLFSNISPENLAIERKISTFLFGLLAS 407
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,163
Number of Sequences: 5004
Number of extensions: 62631
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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