Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26n15
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733...    32   0.38 
04_04_0188 - 23433753-23436572                                         31   1.2  
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830     30   1.5  
07_01_0491 + 3701445-3701782,3703000-3704101                           28   6.2  
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621...    28   6.2  
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999...    28   8.1  

>04_03_0927 +
           20871487-20871903,20872667-20872812,20873204-20873301,
           20873378-20873572,20873670-20873797,20873892-20874050,
           20875119-20875223,20875449-20875559,20875653-20875790,
           20875909-20876091,20876362-20876517,20876615-20876738,
           20876820-20877030,20877614-20877729,20877828-20878053,
           20878218-20878311,20879198-20879275,20879822-20879971,
           20880086-20880292,20880584-20880788,20880990-20881096
          Length = 1117

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -1

Query: 668 LDSIQSKALRIITGAMKSSPVTALQVECVDPPLHLRRQYLSDKF 537
           L  I +K+LR+IT A  SSPV+  + + +DP +  +  Y S  F
Sbjct: 187 LGVIDNKSLRLITDASVSSPVSREKAQGLDPSMREKVIYSSPNF 230


>04_04_0188 - 23433753-23436572
          Length = 939

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -1

Query: 392 TPTHHSHIFPLFCVNYKALILKPDIHLDMGVSKYQPQP-NTNFNFVID 252
           +P H S +  L+  ++  L+ +   +LDM VSKY+ QP   ++  V+D
Sbjct: 664 SPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVD 711


>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
          Length = 763

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = -1

Query: 320 IHLDMGVSKYQPQPNTNFNFVIDQDWNDYNHIYTDASKHPQGCVGVGVYHSQSKIVEKIK 141
           +H  M   +Y+ QP+  F    ++ W   N  Y   + H   C      H Q  ++++  
Sbjct: 116 LHRSMHRDRYERQPSGRFRQWPERQWE--NSGYLGGNHHQSTCQCAQCLHGQRAVMQEEH 173

Query: 140 LPSETSVFTGE 108
           +P  T  F G+
Sbjct: 174 IPM-TRYFAGQ 183


>07_01_0491 + 3701445-3701782,3703000-3704101
          Length = 479

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
 Frame = +1

Query: 49  NVFFILNIKMYSMALYIPKHSPVN--------TDVSDGNFIFSTIFD 165
           N  F +NI  + ++LY+ +H P+N        T V+DG  +++ +FD
Sbjct: 194 NAPFTVNIYPF-LSLYLDEHFPINFAFFDGGSTPVNDGGIMYTNVFD 239


>04_01_0476 +
           6215401-6217445,6217538-6217630,6218031-6218133,
           6218237-6218254
          Length = 752

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 33/162 (20%), Positives = 67/162 (41%), Gaps = 9/162 (5%)
 Frame = -1

Query: 551 LSDKFVFKSLQIQNNHIITKLKTLNELIESSSFWKHKRLPCLIISYRKYLSIQTPTHH-- 378
           L   F+ K   I++++++  L  L++  ES S  +H R     I    ++SI T   H  
Sbjct: 518 LQISFIRKVANIEDHYVVHDL--LHDFAESISNGEHFR-----IEDDFHVSIPTNVRHLY 570

Query: 377 ---SHIFPLFCVNYKALILKPDIH----LDMGVSKYQPQPNTNFNFVIDQDWNDYNHIYT 219
              S+I  ++    + + +K ++         V+ +     +NFN+ +++   +   +  
Sbjct: 571 VNASNISTVYASLEENIEIKKNLRSLIICKADVASWSWTRTSNFNYALEETLKELGSLRV 630

Query: 218 DASKHPQGCVGVGVYHSQSKIVEKIKLPSETSVFTGECFGIY 93
              +HP G +   + H        IK   E +      FG+Y
Sbjct: 631 LVLRHPAGVLPNNIQHMVHLRYLDIKESREFTFLPTSLFGLY 672


>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
            23300052-23300415,23300493-23300574,23300793-23300873,
            23300974-23302106,23302202-23302350,23302426-23302516,
            23303628-23305940
          Length = 1446

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 311  DMGVSKYQPQPNTNFNFVIDQDWNDYNHIYTDASK 207
            D  V    PQ ++N N   +  WND NH +++  K
Sbjct: 1279 DGHVDSATPQDSSNNNLAENIGWNDENHAHSEEVK 1313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,619,416
Number of Sequences: 37544
Number of extensions: 324885
Number of successful extensions: 603
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)