Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26n15
         (695 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       42   6e-04
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    33   0.49 

>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 42.3 bits (95), Expect = 6e-04
 Identities = 24/58 (41%), Positives = 30/58 (51%)
 Frame = -1

Query: 251  QDWNDYNHIYTDASKHPQGCVGVGVYHSQSKIVEKIKLPSETSVFTGECFGIYKAIEY 78
            +D    N IYTD SK   G     V  S  KI+   +LPS  S+FT E F I KA ++
Sbjct: 957  EDLGVKNWIYTDGSK-VTGATTFAVVDSNRKIIAGGRLPSYNSIFTAEAFAILKACQF 1013


>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 32.7 bits (71), Expect = 0.49
 Identities = 41/200 (20%), Positives = 86/200 (43%), Gaps = 3/200 (1%)
 Frame = -1

Query: 671  KLDSIQSKALRIITGAMKSSPVTALQVECVDPPLHLRRQYLSDKFVFKSLQIQNNHIITK 492
            K+ +  + A+R+  GA +S+P+  L  E   PPL ++R         +  ++  N I++K
Sbjct: 812  KIKTPFNSAIRLALGAYRSTPINNLLYESNTPPLEMKRD-------LQIAKLSQNLILSK 864

Query: 491  LKTLNELIESSSFWKHKRLPCLIISYRKYLSIQTPTHHSHIFPLFCVNYKALILKPDIHL 312
               +++ ++     K K+   +  + +  L +  P     +      N     L   I  
Sbjct: 865  NTPIHKFLKPKKANK-KKTSTIDRTIKLSLELNLPYKPIKLHK----NKPPWTLPNLIDT 919

Query: 311  DMGVSKYQPQPNTNFNFVIDQDWND---YNHIYTDASKHPQGCVGVGVYHSQSKIVEKIK 141
             + + K +      +  + +   N+   +N I+TD SK     +   +  +++ +++   
Sbjct: 920  SLRIHKKEQTSPDQYRKLYEHTKNNLKTHNFIFTDGSK-INYTISFAI-TTETDVLKYGI 977

Query: 140  LPSETSVFTGECFGIYKAIE 81
            LP  +SV T E   I +AIE
Sbjct: 978  LPPYSSVLTSETIAILEAIE 997


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,337,089
Number of Sequences: 53049
Number of extensions: 609255
Number of successful extensions: 1118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)