Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26n15
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.6  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   2.1  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   2.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.5  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -1

Query: 614 SPVTALQVECVDPPLHLRRQYLSDKFVFKSLQIQNNHIITKLKTL 480
           +PV  L+    +PP+ +        F F+++Q   +    ++KTL
Sbjct: 25  NPVQELKALFAEPPVRVSNGGKEQDFRFEAIQCLQSSAFKEIKTL 69


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 16  ACKALFESVSINVFFILNIKMYSMALYIPK 105
           A KA+   V +  FF+ N +M  +  YIP+
Sbjct: 78  ATKAMKNDVILWDFFVKNARMILLEEYIPR 107


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 16  ACKALFESVSINVFFILNIKMYSMALYIPK 105
           A KA+   V +  FF+ N +M  +  YIP+
Sbjct: 52  ATKAMKNDVILWDFFVKNARMILLEEYIPR 81


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -1

Query: 215 ASKHPQGCVGVGVYHSQSKIVEKIKLPSETSVFTGECFGIYK 90
           A+ H       G + + SK+     LP   + +   C G YK
Sbjct: 34  ATSHEASAPAEGKFKTVSKVPGPFSLPIFGTRWIFSCIGYYK 75


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 266 NFVIDQDWNDY 234
           N  ++Q+WNDY
Sbjct: 70  NVWVEQEWNDY 80


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 219 CIYMVIVIPILVYYEIKVSIWL 284
           C+  ++V+P    YE+  + WL
Sbjct: 92  CLVGLVVMPFSAIYEVLENRWL 113


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 177 DSYTNTTLRVFRSICIYMVIVIPILVYY 260
           ++Y N   +++ +I     I IP+ VYY
Sbjct: 103 NNYNNNCKKLYYNINYIEQIPIPVPVYY 130


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 177 DSYTNTTLRVFRSICIYMVIVIPILVYY 260
           ++Y N   +++ +I     I IP+ VYY
Sbjct: 103 NNYNNNCKKLYYNINYIEQIPIPVPVYY 130


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 177 DSYTNTTLRVFRSICIYMVIVIPILVYY 260
           ++Y N   +++ +I     I IP+ VYY
Sbjct: 103 NNYNNNCKKLYYNINYIEQIPIPVPVYY 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,306
Number of Sequences: 438
Number of extensions: 4124
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)