Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26n14
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    29   0.90 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   2.8  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    27   3.6  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   4.8  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   4.8  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   6.4  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 548 EKYNRIMRKLIYLSIQKRNDARIQALRLAEENYYLQNCFTQVLIEINDL 694
           E  + +  K I   I K +  +I+  RL +EN +LQ+  T +L E+ +L
Sbjct: 346 EDIHNVNIKQITTLIGKMSQVQIECKRLRKENLFLQSERTHLLRELEEL 394


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 52   KKQKFVGTVAKKTSSVLNSNLNKALDERRKLQIKLREATNKQHQDMS 192
            KKQKF+ +V  K S +L   +++  DE  +    + E  N++  +M+
Sbjct: 998  KKQKFLNSVIIKASVILEKEISEKQDEASQ-TTNVAELVNQKISEMN 1043


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 490 KLTYNQKYVCPLRKQNKKLGKV*SNHEKTNLFVNTKTKRRKNPSVEI 630
           ++T  ++ +  L K+N KL +  SNH  T   +   T+  KN S ++
Sbjct: 472 QITNLEEGMVMLNKENTKLSEALSNHRVTRSEMEEATEILKNNSADL 518


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +2

Query: 497 RIIKNMYVPCENKIKSLEKYNRIMRKLIYLS--IQKRNDARIQA 622
           ++I  +++   +   SLE+YN+ MR++  LS  +QK +  ++Q+
Sbjct: 559 QVIPRLWILSVSPSLSLEQYNKCMREIRSLSDAVQKSHAKKLQS 602


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
 Frame = -1

Query: 413 IWTDIF----NRYFIWTRAWFPGP 354
           IW DI      RYF W +A FP P
Sbjct: 408 IWLDIEYASKRRYFTWDKATFPNP 431


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1101

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 25   LQVVYIKRMKKQKFVGTVAKKTSSV--LNSNLNKALDERRKLQIKLREATNKQHQDM 189
            +++VY       +  GTV +  + V   NSN +K LDE +   I ++E   +  +++
Sbjct: 952  VELVYYLAYHSDRIFGTVEELPTPVSPANSNNDKQLDESKFQAIAMKEMPERHPKEI 1008


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,056
Number of Sequences: 5004
Number of extensions: 64934
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)