Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26n13
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 56 5e-09
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 44 1e-05
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 31 0.11
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 29 0.59
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|... 27 1.4
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 27 2.4
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 3.2
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 3.2
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 5.5
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 25 7.3
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces... 25 9.6
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 9.6
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 55.6 bits (128), Expect = 5e-09
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Frame = +1
Query: 172 GVPGAGNQTVAETISDITGYNMIRPGELERVEATRDTVRGRMVAEKIRTLEDL-PEQLTV 348
G PGAG T A I G + G++ R + R T G+ A+KI L + +
Sbjct: 10 GPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKE-AKKIMDQGGLVSDDIVT 68
Query: 349 DLIKEEMLSQPEAK-GFILVGFPRN----SRMSDIFSRQVKWPEKVVALEVDNEVAAARL 513
+IK+E+L+ PE K GFIL GFPR +++ + V+ L+VD+E+ R+
Sbjct: 69 GMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELLVRRI 128
Query: 514 QNKLSELG 537
+L G
Sbjct: 129 TGRLVHPG 136
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 44.0 bits (99), Expect = 1e-05
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Frame = +1
Query: 157 VIFVNGVPGAGNQTVAETISD-ITGYNMIRPGELERVEATRDTVR-GRMVAEKIRTLEDL 330
VIFV G PGAG T + +++ + I G+ R E R + G ++ E I+ + +
Sbjct: 4 VIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIV 63
Query: 331 PEQLTVDLIKEEMLSQPEAKG---FILVGFPRNSRMSDIFSRQVKWPEKVVALEVDNEVA 501
P ++T+ L++ +M + KG F++ GFPR + F + V + + E
Sbjct: 64 PMEITISLLETKM-KECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFALYFRCGQETM 122
Query: 502 AARLQNKLSELGR 540
RL ++ GR
Sbjct: 123 LKRLIHRGKTSGR 135
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 31.1 bits (67), Expect = 0.11
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 145 RRLPVIFVNGVPGAGNQTVAETISDITGYNMIRPGEL 255
R LP I + G PG G T+AE +++ T I G++
Sbjct: 6 RELPNIIICGTPGTGKTTLAEQVAETTELENICIGDV 42
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 28.7 bits (61), Expect = 0.59
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 103 DIEVVEDLYDMSPVRRLPVIFVNGVPGAGNQTVAETISDITGYNMIRPG 249
D+ + + D S VRR P FVNGV N I D++G ++ G
Sbjct: 430 DVVLKGSIPDTSSVRRNPPCFVNGVESI-NVDFEARIFDVSGDRLVLAG 477
>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
L15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 225 RLQHDPAGRTGKS--RGYKGHGQRENGRRKDSNARGST 332
R+ PA GK+ RG+KG GQR R K G T
Sbjct: 16 RVGRGPASGLGKTSGRGHKGSGQRRGRRIKPGFEGGQT 53
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 298 VAEKIRTLEDLPEQLTVDLIKEEMLSQPEA 387
+ E +R DLPE L + L KEE L P++
Sbjct: 781 IHEVLRLRFDLPENLKLQLNKEEALLPPKS 810
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +1
Query: 157 VIFVNGVPGAGNQTVAETISDITGYNMIRPGELERVEATRDTVRGRMVAEKIRTLEDLPE 336
++ + G+ GAG T+A I+ GY ++ + + T TV + V+ I L
Sbjct: 418 IMMLTGLAGAGKTTLAHVIAHQAGYKVLEINASD--DRTAHTVHEK-VSSAISNHSALSS 474
Query: 337 QLTVDLIKE 363
Q T ++ E
Sbjct: 475 QPTCVIVDE 483
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 26.2 bits (55), Expect = 3.2
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +1
Query: 160 IFVNGVPGAGNQTVAETISDITGYNMI 240
+ ++G PG G T A ++ + GY+++
Sbjct: 412 VLLSGPPGIGKTTAAHLVAKLEGYDVL 438
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 5.5
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 343 TVDLIKEEMLSQPEAKGFILVG--FPRNSRMSDIFSRQVKWPEKVVALEVDNEVAAARLQ 516
TV + +E P LV S + + S+ ++ EKV ALE D E+ +Q
Sbjct: 512 TVQVALDEYAQNPSTASETLVNKELANFSSIKEAVSKTLELREKVRALECDVEIQKQTVQ 571
Query: 517 NKLS 528
++S
Sbjct: 572 YQIS 575
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 25.0 bits (52), Expect = 7.3
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = +1
Query: 310 IRTLEDLPEQLTVDLIKEEMLSQPEAKGFILVGFPRNSRMSDIFSRQVKWPEKVVALEVD 489
+ TL LP+ + +D ++EMLS+ A+ G + ++ D +Q++ ++ L+
Sbjct: 143 LETLPALPDAIDMDEDEKEMLSEARARLANTQG--KKAKRKD-REKQLELTRRLSHLQKR 199
Query: 490 NEVAAARLQNKL 525
E+ AA + KL
Sbjct: 200 RELKAAGINIKL 211
>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 103 DIEVVEDLYDMSPVRRLPVIFVNGVPGAG 189
DIE ++ + + +LP + GVPGAG
Sbjct: 355 DIEPLKQTNILDNIEQLPGVIGVGVPGAG 383
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 421 SRMSDIFSRQVKWPEKVVALEVDNEVAAA 507
S +S + +KWP KV AL++ +A++
Sbjct: 140 SLISYLDDSSIKWPSKVAALQLLGSLASS 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,229
Number of Sequences: 5004
Number of extensions: 42978
Number of successful extensions: 141
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -