Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26n10
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   2.6  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   3.5  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    26   6.1  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   8.1  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   8.1  

>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 195 HNFQFQRNSILYSTSHAFEVAYICVTWLSTIHSSC*LDF 79
           H+F F ++  L ++ H F+    C   LS +H+ C   F
Sbjct: 33  HSFMFVKSLHLMTSQHIFKCLSSCNYALSILHNICLASF 71


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 701 GAGPLPGVARATLRGGRPVQVVAVRAHLAALPRVRRDPYHERL 573
           GAG    V     RG  P QV   R H AA+     +P+H+++
Sbjct: 54  GAGGALAVIPLNERGKLPDQVNLFRGHTAAVLDTDWNPFHDQV 96


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 396 WAVLVKIAKSVVEYTYTN-LDNSVGPEDAESCQLMQLWVVWMLAAGPLAY 542
           W+V  +I    + + +T    NS    DA  C+L+ +W V    +  + Y
Sbjct: 101 WSVCRQIPSDDMAFKFTKCFQNSQQFRDANFCKLVLVWTVCQCVSSTVYY 150


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 209 PLNELITFNFNVIPYCIPHHMHLKLHTY 126
           P N+L     N+IPY +  H+H +  +Y
Sbjct: 740 PKNDLNVLTNNLIPYSLTDHIHEREISY 767


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = -2

Query: 431 DYRFRDFHQHRPEM*AVDHHPQEKEILQNQLPKRNPTERET-SEQGRDHSLRQQHGANRP 255
           D R RD  + R      D    ++   +     R P+      +  RDH  R++  + RP
Sbjct: 148 DSRERDRDRDRTRSSRFDDDDDDRAPYEESRLSRAPSRASRYDDDDRDHRSRRRSRSRRP 207

Query: 254 QHRRGRR 234
              R RR
Sbjct: 208 GRSRSRR 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,592
Number of Sequences: 5004
Number of extensions: 60358
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)