Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26n10
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = -2

Query: 371  PQEKEILQNQLPKRNPTERETSEQGRDHSLRQQHGANRPQHRR 243
            PQ+++  Q Q   +  +++   +Q +    +QQ    +PQ ++
Sbjct: 1505 PQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQ 1547


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -3

Query: 433 STTDFAIFTSTAQKCKL*ITIHRKRRFCKTSSQNGTLRNAKRLNKAAI 290
           +T    +F S   + +L + IHR R      S NG+ R+ +  ++ ++
Sbjct: 287 TTKSSKMFGSRFDEERLTLRIHRGRGSVHNGSNNGSPRSPESNSRCSV 334


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 674 RATLRGGRPVQVVAVRAHLAALPRVRRDPYHE 579
           +AT  GG+PV VV   A        +  P+H+
Sbjct: 891 KATNIGGKPVAVVKSSAQSLLQSNQQHFPHHQ 922


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 476 VFWTDTVIKICISIFDYRFRDF 411
           + WT T   IC+ +F +    F
Sbjct: 493 ICWTITTPAICVGVFTFNIIKF 514


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 476 VFWTDTVIKICISIFDYRFRDF 411
           + WT T   IC+ +F +    F
Sbjct: 546 ICWTITTPAICVGVFTFNIIKF 567


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,913
Number of Sequences: 438
Number of extensions: 4645
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)