Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26n04
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.5  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    28   1.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   2.0  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    27   2.7  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    27   3.6  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    25   8.2  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.2  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    25   8.2  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   8.2  

>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 470 DDETLAAKIEQFEAPKRQFREANKHLQGMITENIR---KALQSSAKVKTASK 616
           D++TL   +EQ +   R+ REA + LQ     N R   +AL+  A+ K A++
Sbjct: 101 DEKTLQDLLEQRQVALREAREAEEELQRARQYNDRSTSEALELEARAKKAAQ 152


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 533 ANKHLQGMITENIRKALQSSAKVKTASKIH 622
           +NK+   +I EN RK  QS+  ++T+ K H
Sbjct: 54  SNKNKGSIIEENTRKPFQSARNLQTSLKTH 83


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 515  KRQFREANKHLQGMITENIRKALQSSAKVKTASKIHLMRIKQ 640
            ++Q +   +HL G  +      LQSSA+V   +  H+++I++
Sbjct: 1263 QKQVKLRRRHLIGFQSRQFTNVLQSSAEVMFENLWHILQIRE 1304


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 282 KCAKVFCREHFNTHCLSGECELA 350
           + AK+ C  +F+ HCL   C +A
Sbjct: 50  RIAKIPCGHYFHNHCLESWCRVA 72


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 263 VCLVAARILAIFTKRWKFHFIQNDSHSLIL*FVSS 159
           + L+   +L ++   W  HFI    HSL+  F SS
Sbjct: 178 ILLLRVSLLQLYLISWTIHFINFVFHSLLAVFFSS 212


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 476 ETLAAKIEQFEAPKRQFREANKHLQGMITENIRKALQSSAKVKTASKIHLMRIKQKASG 652
           ET+  K E+ E    +  ++  HLQ  +TE   K  + S        ++L+  K K+SG
Sbjct: 110 ETIFGK-ERKEMESNKLLDSATHLQSRVTEADTKNDERSTLRSLDKSLYLLVKKSKSSG 167


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 461 PEIDDETLAAKIEQFEAPKRQFREANKHLQGMITENIRKALQSSAKVKTAS 613
           P+ D   L    ++FE   R+FR +   L+ + T+N +  L S+ + +  S
Sbjct: 123 PQTDRLILENHQQEFERAARRFRSSIAALRNLNTQNNQSTLASNHEDENVS 173


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 464 EIDDETLAAKIEQFEAPKRQFREANKHLQGMITENIRKALQSSAKVKTASK 616
           E DDE +  ++E+ + PKR+ R   +  Q +  +   K      K  T  +
Sbjct: 276 ESDDEFVEKELEEVDIPKRKNRRGQRARQAIWEKKYGKGANHLIKKATEER 326


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 677 GQMVECFSGRRLSVLFSSSEFSMPFSLLLTIVVLYVCFL 561
           G +  C++ ++L+       F+MPF+ +L + V   C L
Sbjct: 335 GGVAYCYNAQKLNNATGPVTFNMPFASVLPLAVSVSCDL 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,076
Number of Sequences: 5004
Number of extensions: 57771
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)