Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26n04
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.95 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.3  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   3.8  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 297 FCREHFNTHCLSGECELAPQPKEVNLKKDDQIFKCSEKSCNKGNIHEMT 443
           F   H+ T   SGE  L  +  E   + D Q   C+  SC+   +H  T
Sbjct: 325 FAGVHYFTKVGSGEIPLEEEEWENENESDYQDAFCNIVSCSPQTVHPET 373


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 344 FTFSGQAVSVEMFSAKNFCTFAL*WQ 267
           +TF+G  VS+ +++ KNF   +  W+
Sbjct: 172 WTFNGDQVSLALYNNKNFVDLSDYWK 197


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 268 CHYSANVQKFF 300
           CHY  N +KFF
Sbjct: 131 CHYKQNPEKFF 141


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 611 SKIHLMRIKQKASGPKSIP 667
           S+ HL+ + +K  GP ++P
Sbjct: 33  SRRHLLELAEKIPGPPALP 51


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 14/71 (19%), Positives = 30/71 (42%)
 Frame = +2

Query: 494 IEQFEAPKRQFREANKHLQGMITENIRKALQSSAKVKTASKIHLMRIKQKASGPKSIPPS 673
           +E F+ P       N+H + M    + K  +  + +K + K+   RIK      + +   
Sbjct: 631 MESFKPPTLTESLLNRHNEDMEKLMMLKHREFRSSIKASDKLKDSRIKT----TEKLSTD 686

Query: 674 DRVYFAIRETH 706
              +F + ++H
Sbjct: 687 PNTHFQVNQSH 697


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,061
Number of Sequences: 438
Number of extensions: 3790
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)