Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26m23
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   338   6e-94
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   187   1e-48
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   187   1e-48
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   173   2e-44
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    33   0.040
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    28   1.5  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    27   2.0  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   3.5  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   6.0  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        26   6.0  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   8.0  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  338 bits (830), Expect = 6e-94
 Identities = 152/217 (70%), Positives = 175/217 (80%)
 Frame = +2

Query: 47  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 226
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 227 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 406
           PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120

Query: 407 RKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVV 586
           R+EAE CD LQGFQ                 +SKIREEYPDR+M TFS+ P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180

Query: 587 EPYNATLSVHQLVENTDESYCIDNEALYDICFRTLKL 697
           EPYNATLS+HQLVEN+DE++CIDNEAL  I   TLK+
Sbjct: 181 EPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKI 217


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  187 bits (456), Expect = 1e-48
 Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 6/223 (2%)
 Frame = +2

Query: 47  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG------TYHGDSDLQLERINVYYNEA 208
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 209 TGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 388
             GK+VPR+I VDLEP  +D VR+GP+  +F P+  V G+  A NN+A+GHYT G E++D
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120

Query: 389 SVLDVVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPK 568
           SVL+ +R+ A+ C  LQGF                  + ++  EY  +    FS+ P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180

Query: 569 VSDTVVEPYNATLSVHQLVENTDESYCIDNEALYDICFRTLKL 697
           VS +VVEPYN+ L+ H  ++N+D ++ +DNEA YDIC R L +
Sbjct: 181 VSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDI 223


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  187 bits (456), Expect = 1e-48
 Identities = 89/219 (40%), Positives = 128/219 (58%), Gaps = 2/219 (0%)
 Frame = +2

Query: 47  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLER--INVYYNEATGGK 220
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 221 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 400
           YVPR+I VDLEP  +D VR+GP+  +F P+  + G+  A NN+A+GHYT G ELVD V D
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120

Query: 401 VVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDT 580
            +R+ A+ C  LQGF                  + ++  EY  +    FS+ P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180

Query: 581 VVEPYNATLSVHQLVENTDESYCIDNEALYDICFRTLKL 697
           VVEPYN+ L+ H  ++  D ++ +DNE+ YDIC R L +
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDI 219


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  173 bits (421), Expect = 2e-44
 Identities = 79/212 (37%), Positives = 131/212 (61%), Gaps = 3/212 (1%)
 Frame = +2

Query: 50  REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 229
           REI+ +QAGQCGNQIG++FW+ +  EHGI P GT    +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 230 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 403
           RAIL+DLEP  ++++ S  +G ++ P+N +  ++  GAGNNWA G Y+    + + ++D+
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121

Query: 404 VRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVP-SPKVSDT 580
           + +EA+G D L+GF                  + ++ + YP +I+ T+S+ P S  VSD 
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181

Query: 581 VVEPYNATLSVHQLVENTDESYCIDNEALYDI 676
           VV+PYN+ L++ +L  N D    +DN AL  I
Sbjct: 182 VVQPYNSLLALKRLTLNADSVVVLDNAALAHI 213


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 99  LSSGKLYPMSMASIRRERITETPTSSWSASTCTITRRPEES 221
           L  GKL P+  A +++ ++    TS++S +T  +T+  EES
Sbjct: 401 LEGGKLLPLPTAPVQQSKVQINGTSAYSTATDAVTKDAEES 441


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = -2

Query: 694 LQRSEADVVQSLVVNAVRFICIFHQLMYGEGCVIRLNYGVRHFR 563
           LQ      +++L+  A+  +C + + ++ E C  ++N+ + HF+
Sbjct: 9   LQTKSDFTLKNLIFFAISTLC-YKRALFNENCYKKVNFEIEHFK 51


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 377 PRLRCSDP*PSCCQHPIAQRQSC 309
           PR +C D  PSCC     + +SC
Sbjct: 481 PRTQCVDTPPSCCGGHCCKEESC 503


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 281 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 382
           GP+G +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 86  NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERI 187
           N++G    EV++++  +DPT     + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 350 AKGHYTEGAELVDSVLDVVRKEAEGCDCLQ 439
           A+GH   G ELV +  D +RK++E    L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = -2

Query: 391 RIYQLRAFGVVTLSPVVASTRLPKDKVVRTEDLTEWSRAYRVHCPGLQVHKDSPRHVLSS 212
           +I  ++ F    L   +   +   D ++  EDL  WS A+  +  G  + +   + +L S
Sbjct: 325 QIIAMKGFDTAMLYVGMRKFKQAADAIIELEDLNSWSHAFYRYFAGCCLLQHG-KEILGS 383

Query: 211 G 209
           G
Sbjct: 384 G 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,064
Number of Sequences: 5004
Number of extensions: 63320
Number of successful extensions: 203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)