Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26m22
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    26   3.0  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    26   4.0  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.0  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   9.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.2  

>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = -2

Query: 244 KIMHHTHSTLQTTIFQRDHTIMVVQAFHLNA*TNNISLTSYSDIDTNLK 98
           K+ HH  S + TT+  ++       A  L +   ++ LT    ++ + K
Sbjct: 147 KLKHHAESAIHTTVINKEDEEQERVALDLQSLAQHLGLTEQEGMEDHFK 195


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 280 VFALTSLCLNILEIKAKNVCITCEEISCFLLVLNTNSVAVLYVNNIYDLPVFME 441
           VF  + +  N    K +++ I C+ +  FLL +  N+VA  + +NI D  +  E
Sbjct: 154 VFLSSHILYNAGLTKEEDLQIACQIVRNFLLSVLHNNVAPEFEDNIRDACLLAE 207


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 489 LFTENIKPNVHLVLVIFHEYRQIVNVVYIQD 397
           L  EN   ++H++   F EY ++ N+ +++D
Sbjct: 192 LSIENFGISIHVITKNFREYYKLDNIEHVKD 222


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +3

Query: 237  IILRCL*YNLLNKVGICTHQFMLKYI 314
            +++RC+ +NL+ + G   +  ++KYI
Sbjct: 959  VLVRCIAFNLMLQAGALKYTPLIKYI 984


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 227 TFYFANYHFSKRSYYYGCTSISSKCV 150
           +F F N  F  R+  YG  +  S+C+
Sbjct: 495 SFLFKNLMFGLRALMYGLRTCKSRCI 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,400
Number of Sequences: 5004
Number of extensions: 37080
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)