Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26m22
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0096 - 12296913-12296951,12297205-12297282,12297335-122973...    30   1.3  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    28   5.3  

>08_02_0096 -
           12296913-12296951,12297205-12297282,12297335-12297345,
           12298140-12299044,12299074-12299243
          Length = 400

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 366 PSSTKYK*RGSLVCKQHLRFACIHGKLPKLNV 461
           P   ++  R +LVCK  LR  C HG L +L V
Sbjct: 29  PDEPEHLFRAALVCKSWLRAICEHGFLRRLKV 60


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 289  LTSLCLNILEIKAKNVCITCEEISCFLLVLNTNSVAVLYVNNIYD 423
            L S   N++ +   N+C +      F  +LN +++  LY++  YD
Sbjct: 1293 LISTSSNLVNLTELNLCFSKLNEDSFACILNLHNLVELYLSKAYD 1337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,680,150
Number of Sequences: 37544
Number of extensions: 175612
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)