Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26m18
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch...    50   8e-08
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    31   0.054
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    27   0.88 
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    27   1.2  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    25   3.5  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   4.7  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    24   6.2  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    24   6.2  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    24   8.2  

>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 50.4 bits (115), Expect = 8e-08
 Identities = 20/57 (35%), Positives = 38/57 (66%)
 Frame = +3

Query: 150 ESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQIDESIDSRLDLGNIKAEPLGPMVH 320
           +S ER+ S    +  + LG++++RG+NVA+VG ++E +DS ++   I+ E +  +VH
Sbjct: 38  DSFERIISMDQDMETIPLGVYLLRGENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 31.1 bits (67), Expect = 0.054
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
 Frame = +3

Query: 204 GLHIIRGDNVAIVGQ--IDESIDSRLDLGNIKAEPLGPM 314
           G++I+RG+NV ++G+  +D+  D+   L  + AE L P+
Sbjct: 68  GVYIVRGENVVLLGELDLDKEYDAVKQLRRMPAEELYPL 106


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 0.88
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 242 DYCHI--VSSDYVKSKYYLSDATCGGKHSFVRFVLFDSRNFRV 120
           DY H+  VS +++  KYYL        H  VR++  D   +RV
Sbjct: 860 DYLHLLLVSMNHLIKKYYLEARLSLTVHDEVRYLSSDKDKYRV 902


>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 237 IVGQIDESIDSRLDLGNIKAEPLGPMV 317
           + G +  S +  LDLG  K +PLG +V
Sbjct: 54  VPGHVFTSEEENLDLGEFKLQPLGTIV 80


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 145 CLIHVIFESRSHSN--YFIYKFKLVIINIKQL*EIFKFQGAATDYYLKK 5
           C+I  +   +S  N  Y+IYKF   I+  K L +  K+     + Y K+
Sbjct: 188 CVIRYLKHLKSVPNVSYYIYKFPFKILADKSLEDNLKYLDELDENYKKE 236


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 141 KQYESHERVFSSTSGVAQVVLG---LHIIRGDNVAIVGQID 254
           ++Y  +E   SS+  + + V+    +H IRG    + GQ+D
Sbjct: 98  EEYALYEAELSSSPSIHEEVIDCNFVHAIRGFEATVEGQVD 138


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 274 NLLSIDSSICPTIATLSPLI 215
           NLLS+D+SIC  I   + L+
Sbjct: 225 NLLSVDNSICSIIVENTTLV 244


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
 Frame = +2

Query: 92  INKIIRMASGLE-------NYVNQTVRISRKSVFLHKWRRSSSTWTSHNQRRQCGNSRAN 250
           +  +IR+  GL         + NQ  R    SVF H+ R       SH+   + GN    
Sbjct: 584 LGSVIRLQKGLNPHQFLDPQWANQLPRQPDSSVFDHQGRNPPIQGLSHDTSSEYGNKSQF 643

Query: 251 RRV 259
           +R+
Sbjct: 644 KRL 646


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 242 DYCHIVSSDYVKSKYYLSDATCG 174
           D C  +  +Y K+KY+L D   G
Sbjct: 167 DECLHIEFEYSKNKYHLKDVIIG 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,410,387
Number of Sequences: 5004
Number of extensions: 24780
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)