Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26m18
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032...    73   9e-14
04_04_0022 + 22199603-22199782,22201434-22201502,22201610-222017...    29   0.83 
01_06_1547 - 38150814-38151488,38151608-38151666,38151774-381519...    27   3.4  
09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004     27   5.9  
04_04_1369 - 32982354-32983024,32983386-32983959                       26   7.7  
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410...    26   7.7  

>05_07_0342 +
           29402867-29402906,29403012-29403052,29403146-29403220,
           29403523-29403648,29404195-29404247,29404385-29404475
          Length = 141

 Score = 72.5 bits (170), Expect = 9e-14
 Identities = 29/53 (54%), Positives = 43/53 (81%)
 Frame = +3

Query: 162 RVFSSTSGVAQVVLGLHIIRGDNVAIVGQIDESIDSRLDLGNIKAEPLGPMVH 320
           +V     GV Q+VLGL+IIRGDN+++VG++DE +D+RLDL N++A PL P++H
Sbjct: 89  KVSCQHEGVQQLVLGLYIIRGDNISVVGEVDEELDARLDLSNLRAHPLKPVIH 141


>04_04_0022 +
           22199603-22199782,22201434-22201502,22201610-22201708,
           22201776-22201859,22202400-22202477
          Length = 169

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +3

Query: 195 VVLGLHIIRGDNVAIVGQI 251
           V LGL++IRG+NV ++G++
Sbjct: 98  VPLGLYVIRGENVVLIGEL 116


>01_06_1547 -
           38150814-38151488,38151608-38151666,38151774-38151919,
           38152078-38152274,38152542-38152920,38153000-38153031
          Length = 495

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +2

Query: 131 YVNQTVRISRKSVFLHKWRRSSSTWTSHNQRRQ 229
           Y +  +R+S +++ LHK ++ +S+W+   +R+Q
Sbjct: 463 YHSLVLRVSERTI-LHKLKKHASSWSKTKKRKQ 494


>09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004
          Length = 258

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 182 WRRSSSTWTSHNQRRQCGNSRANRRVN**QIRPRKHQGRTTWTNGTLELV 331
           WR + +     ++R + G  R  RR    + R  +  GRT W N T+  V
Sbjct: 130 WRHAGAGGRRRHRRARRGAVRLRRRRQQWRRRRTRSCGRTGWHNATVATV 179


>04_04_1369 - 32982354-32983024,32983386-32983959
          Length = 414

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -1

Query: 305 KWFCLDVSEV*SAIN*LVYLPDYCHIVSSDYVKSKYYLSDATCGGKHSFVRFVLFDS 135
           KW CLD       +N  + L DY   +     +++ Y S+     K  FVR +L DS
Sbjct: 66  KWKCLDFI---LKLNCELSLQDYIRAIHKLEKQARCYYSEEIPMEKMMFVRLLLLDS 119


>03_05_0257 +
           22439915-22440275,22440280-22440627,22440962-22441015,
           22441390-22441763
          Length = 378

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +2

Query: 176 HKWR--RSSSTWTSHNQRRQCGNSRANR 253
           H+WR  R    W SH + R CG    +R
Sbjct: 318 HRWRGLRDRRQWQSHTRGRLCGCCAVSR 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,162,245
Number of Sequences: 37544
Number of extensions: 131440
Number of successful extensions: 305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)