Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26m18
(359 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 75 2e-14
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 30 0.56
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 27 3.0
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr... 27 5.2
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro... 27 5.2
Z50863-1|CAA90736.3| 353|Caenorhabditis elegans Hypothetical pr... 26 6.9
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 26 6.9
Z46676-1|CAA86661.1| 799|Caenorhabditis elegans Hypothetical pr... 26 9.1
X16473-1|CAA34493.1| 799|Caenorhabditis elegans zyg-11 protein ... 26 9.1
AC024826-11|AAF60802.1| 246|Caenorhabditis elegans Hypothetical... 26 9.1
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 74.9 bits (176), Expect = 2e-14
Identities = 32/55 (58%), Positives = 43/55 (78%)
Frame = +3
Query: 150 ESHERVFSSTSGVAQVVLGLHIIRGDNVAIVGQIDESIDSRLDLGNIKAEPLGPM 314
++HER +S T GV LGL+IIRG+NVAI+G+IDE +D R+DL N+KA PL P+
Sbjct: 40 DAHERSYSETEGVLTTPLGLYIIRGENVAIIGEIDEELDKRVDLENVKAAPLAPI 94
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 29.9 bits (64), Expect = 0.56
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 204 GLHIIRGDNVAIVGQIDESIDSRL 275
G +IRG+NV + G+ID++I++ L
Sbjct: 66 GFMLIRGENVELAGEIDDTIETGL 89
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 289 MFPRSNLLSIDSSICPTIAT 230
+FP LL+ DS +CP I T
Sbjct: 277 LFPEEQLLTCDSEVCPFILT 296
>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
C25D7.3 protein.
Length = 2150
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 83 FEFINKIIRMASGLENYVNQTVRISRKS 166
FE I + + SG+E VNQ+V ISR S
Sbjct: 1196 FEEIQVDLLLESGVEVQVNQSVTISRSS 1223
>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
protein.
Length = 2150
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 83 FEFINKIIRMASGLENYVNQTVRISRKS 166
FE I + + SG+E VNQ+V ISR S
Sbjct: 1196 FEEIQVDLLLESGVEVQVNQSVTISRSS 1223
>Z50863-1|CAA90736.3| 353|Caenorhabditis elegans Hypothetical
protein C14H10.1 protein.
Length = 353
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 351 LITKHLLTSSNVPLVQVVLP*CFRGLICYQLTRLFARL 238
L+ HL TS NVP+++ +LP G + LT L +
Sbjct: 286 LVALHLHTS-NVPVIETLLPFTAGGFLNIALTELLPEI 322
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
gene nameprotein 162 protein.
Length = 2643
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 194 LSDATCGGKHSFVRFVLFDSRNFRVQKP 111
L + +CG SF+ F F S F KP
Sbjct: 2304 LDNGSCGSSDSFIAFTRFTSIEFLSTKP 2331
>Z46676-1|CAA86661.1| 799|Caenorhabditis elegans Hypothetical
protein C08B11.1 protein.
Length = 799
Score = 25.8 bits (54), Expect = 9.1
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 59 LFDVDYY*FEFINKIIRMASGLENYVNQTVRISRKSVFLHKWRRSSSTWTSHNQRR 226
L D+DY F NKI ++A L+ +N+T R + + L R +S W ++ R+
Sbjct: 104 LGDIDY--FPNTNKI-QVADVLDTALNRTSRQQLRHLDLSGRHRITSNWPTYVARK 156
>X16473-1|CAA34493.1| 799|Caenorhabditis elegans zyg-11 protein
protein.
Length = 799
Score = 25.8 bits (54), Expect = 9.1
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 59 LFDVDYY*FEFINKIIRMASGLENYVNQTVRISRKSVFLHKWRRSSSTWTSHNQRR 226
L D+DY F NKI ++A L+ +N+T R + + L R +S W ++ R+
Sbjct: 104 LGDIDY--FPNTNKI-QVADVLDTALNRTSRQQLRHLDLSGRHRITSNWPTYVARK 156
>AC024826-11|AAF60802.1| 246|Caenorhabditis elegans Hypothetical
protein Y55F3AM.10 protein.
Length = 246
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 167 VFLHKWRRSSSTWTSHNQRR 226
+FLH SSSTWT +N R
Sbjct: 74 IFLHGQSFSSSTWTENNLLR 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,615,539
Number of Sequences: 27780
Number of extensions: 132773
Number of successful extensions: 426
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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