Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26m11
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 32 0.086
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 29 0.81
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa... 28 1.1
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 28 1.4
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 27 1.9
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 1.9
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 26 4.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 4.3
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 26 5.7
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.5
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 9.9
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 31.9 bits (69), Expect = 0.086
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 409 DVTETHTDLIPPIQTPASYVEDISVDRKSNLISWLKKNLLPVTEVNDNIV 558
D T+++ P + + E IS++R + ++ KK LPV + +DN+V
Sbjct: 175 DTNTPVTEVMTPREELITTAEGISLERANEMLRKSKKGKLPVVDKDDNLV 224
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 28.7 bits (61), Expect = 0.81
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +1
Query: 439 PPIQTPASYVEDIS---VDRKSNLISWLKKNLLPVTEVNDNIV-FGNVTIIPPYS 591
PP+ P ++ S +D ++I W+ N++ +N+N++ F N+ I +S
Sbjct: 251 PPLPFPILFLSPTSTKTIDYAKSMIEWMGDNIVRDFGINENLLEFRNINTITDFS 305
>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
sulfurtransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 298
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +1
Query: 388 VPGHAIIDVTET--HTD----LIPPIQTPASYVEDISVDRKSNLISWLKK 519
+PG D+ E H + ++PP ASYV + +DR +N+I + +K
Sbjct: 53 LPGAQYFDIDEAKDHKNPLPHMLPPADEFASYVGKLGIDRNTNVIIYDRK 102
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 478 SVDRKSNLISWLKKNLLPVTEVNDNIVFGNVTII--PPYSIND 600
S +R+ + L + L T +ND IV GNVT I PP ++N+
Sbjct: 767 SEERQRSTEDPLSHDTLSRTILNDQIVKGNVTEIPLPPLAVNE 809
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 388 VPGHAIIDVTETHTDLIPP-IQTPASYVEDISVDRKSNL 501
V G+ I DV+ + ++ P IQ+P SYV S++ S+L
Sbjct: 367 VSGNNIFDVSRNNHEVSSPLIQSPGSYVSMPSINMVSSL 405
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Frame = -3
Query: 432 ICMC----FCNIYYCMAGYNHCV 376
+C+C CNIY C A NH +
Sbjct: 1041 VCLCTTIGLCNIYLCFANENHII 1063
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 145 FPKIQVCILGDSKMNENISEIKGSSDFSKHDCVS 246
FP I CI G E I K DF K CV+
Sbjct: 320 FPSI--CIHGGLPQEERIKRYKAFKDFDKRICVA 351
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 433 LIPPIQTPASYVEDISVDRKSNLISWLKKNLLPVTEVNDNIVF 561
LI + P+S+ +S D SNLI +K V ++ND+I F
Sbjct: 2918 LILTLVDPSSFARSLSFDDVSNLIEQIK-----VLDLNDSIRF 2955
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 53 QNSLFNTVIFNSYNYLIKKQYII 121
Q+SL NT+ +N +I+K+Y+I
Sbjct: 167 QSSLLNTMEYNKEQEVIRKKYLI 189
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 526 LPVTEVNDNIVFGNVTIIPPYSINDICTDNTI 621
+P+ E N+NI F N++ PP +N I NTI
Sbjct: 17 VPLVEKNENITFFNLSFQPP--MNSIVA-NTI 45
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.0 bits (52), Expect = 9.9
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -2
Query: 430 LYVFL*HLLLHGRVQPLCGM 371
+Y+F H++ H ++ LCG+
Sbjct: 590 IYLFSLHIIFHNELESLCGI 609
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,719
Number of Sequences: 5004
Number of extensions: 51260
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -