Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26m11
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0304 + 2037718-2037939,2038169-2038384,2038862-2039329,203...    29   2.6  
10_01_0224 - 2391889-2392332                                           29   4.5  
03_06_0559 + 34719296-34719410,34719519-34719577,34719664-347213...    29   4.5  
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24...    28   7.8  
03_05_0276 + 22646416-22646760,22646858-22647090,22647184-226472...    28   7.8  

>02_01_0304 +
           2037718-2037939,2038169-2038384,2038862-2039329,
           2039419-2040171
          Length = 552

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 358 ANHSTYHTVVVPGHAIIDVTETHTDLIPPIQTPASYVEDISVDRKSN 498
           A+H+   T V P    +  +E  T L+P  + P S +  +S +RK N
Sbjct: 445 ASHAESRTKVKPSGKSLKPSEAATQLLPEQKMPTSSMAMLSSERKEN 491


>10_01_0224 - 2391889-2392332
          Length = 147

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 331 ISHSLILSIANHSTYHTVVVPGHAIIDVTETHTDLIPP 444
           ISH +++   + +  H ++VP  A+ DV E +  ++ P
Sbjct: 67  ISHGIVVFNLDTNELHEILVPADALDDVHEANLSIVVP 104


>03_06_0559 +
           34719296-34719410,34719519-34719577,34719664-34721322,
           34722421-34722562,34722645-34723330
          Length = 886

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 517 KNLLPVTEVNDNIVFGNVTIIPPYSINDICTDNTIVAMQMRK--LIRQMP 660
           +N   + E    I+   V +I PY + D+   NT+     R+  +++Q P
Sbjct: 189 RNAADIMEAASRIIGAGVEVISPYRVRDVGYANTVRVYSQREIAIVQQRP 238


>08_01_0033 +
           244930-245105,245297-245344,245835-246539,246652-246796,
           246893-247240,247882-248721,248786-248832,249470-249596,
           249672-249836,249973-251370,251453-251713,251802-252161
          Length = 1539

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 483 HTNVFNVTSRCLNRWYQICMCFCNIYYC 400
           H+ +  ++S+C+ +   IC  FC I +C
Sbjct: 740 HSILILMSSQCITKQGDICKTFCRIRFC 767


>03_05_0276 +
           22646416-22646760,22646858-22647090,22647184-22647259,
           22647383-22647459,22647559-22647592,22647699-22647848,
           22647935-22648069,22648156-22648227
          Length = 373

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 433 LIPPIQTPASYVEDIS 480
           L+PP++ PASY ED++
Sbjct: 357 LLPPVEIPASYFEDLN 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,673,868
Number of Sequences: 37544
Number of extensions: 267448
Number of successful extensions: 592
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)