Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26m11
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine re...    30   1.7  
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z72502-12|CAI46558.2|  303|Caenorhabditis elegans Hypothetical p...    27   9.2  
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    27   9.2  

>AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 69 protein.
          Length = 324

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 638 RICIATIVLSVQISLIL*GGIIVTFPNT-ILSFTSVTGNKFFFSQDIRLDFLSTL 477
           R+   T++  +   ++L   +I   P T I  F  VTG +FF SQ I + FL TL
Sbjct: 229 RVMFQTLIKGLNFQILL--PMISYIPTTSIYLFNKVTGEQFFLSQYI-ITFLGTL 280


>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 312 YTVYRSDIS*LNSFHSKSQHIPHSGCTRPC 401
           Y V   D++  + F  K++ +P S C+RPC
Sbjct: 486 YGVEELDMTAKSMFFDKTELLPESVCSRPC 515


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 312 YTVYRSDIS*LNSFHSKSQHIPHSGCTRPC 401
           Y V   D++  + F  K++ +P S C+RPC
Sbjct: 486 YGVEELDMTAKSMFFDKTELLPESVCSRPC 515


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
           protein R09H10.5 protein.
          Length = 1603

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 565 NVTIIPPYSINDICTD 612
           +V IIPPY   D CTD
Sbjct: 806 SVVIIPPYGSTDFCTD 821


>Z72502-12|CAI46558.2|  303|Caenorhabditis elegans Hypothetical
           protein C08B6.13 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -1

Query: 437 IKSVCVSVTSIIAWPGTTTVWYVL*FAMERIKL*DIGSIHRINPSNSEFFKSLTFTY 267
           ++SVCV   ++  W    T+ Y++ F M   +   I     INP  S+FF S T T+
Sbjct: 72  LESVCVLFMTLQMWT-VNTIRYIMTFLMAANRFVCI-----INPRFSKFFDSETVTF 122


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 388 VPGHAIIDVTETHTDLIPPIQTPASYVEDISVD 486
           +P  A I+V E H D  PPI+T      DI  +
Sbjct: 166 LPTEAYIEVQEVHDDGTPPIKTFEHVPSDIGAE 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,008,637
Number of Sequences: 27780
Number of extensions: 280202
Number of successful extensions: 788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)