Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26m10
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 29 0.47
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 29 0.82
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 28 1.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 1.9
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.9
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 1.9
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 27 3.3
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 26 4.4
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 5.8
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 7.7
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 25 7.7
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 29.5 bits (63), Expect = 0.47
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 334 RDSKDTESQWYFGRTLSPKSIIIGTRRKEVFGRCKKF*FQKAKTSRQRPKSRNWYAPC 507
RDS ++ + ++ SP+ +II T + +C+ F + P S +YA C
Sbjct: 1946 RDSPAKQAPQF--QSKSPECVIISTMNRSCDSKCRYFLLTAIANQLRYPSSHTYYASC 2001
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 28.7 bits (61), Expect = 0.82
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 677 RHLATEKLVLLLFESVDLRDTIYIQEFFA 591
R LAT L+ L + DLRD + IQE A
Sbjct: 560 RRLATSTLIRLFYYYYDLRDAVPIQETLA 588
>SPAC9E9.14 |vps24||vacuolar sorting protein
Vps24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +2
Query: 212 KKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKI 349
K+ S+ L S +L ND+ A + + GT+ S + ++DVS ++++
Sbjct: 76 KRLAESKALLGSLSLQLNDQMAMLKIQGTMQSSTKIMQDVSSLIRL 121
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 104 PICVIARQLLFKNIESIVTAKPNTVQT 184
P V+ +++FK ES++ KPN VQ+
Sbjct: 771 PSIVLTSKVVFKIAESLILLKPNEVQS 797
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 123 DNCYLRILKALSQQNQILYKHIIVKRFYY 209
D C++R+L A + Q+ ILY VK ++
Sbjct: 275 DPCHIRVLNANTDQSLILYTQSDVKNLHF 303
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 476 GQNLVTGMLHAMLLKTYADIAKELGVAPG 562
GQ + GMLHA L +YA+ + + PG
Sbjct: 467 GQPQIPGMLHASLSNSYAEPSTQNSFIPG 495
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +2
Query: 119 ARQLLFKNIESIVTAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGT 298
+R + K+I++ A + + YYS K+ K + S + L+ ++ L+G
Sbjct: 204 SRSAIQKDIKAKERAVEHIAKKYYSSKITKEKVRWCLYSIADSNSYLRYNRDPIAKLIGL 263
Query: 299 V--HFSKQSIED 328
V +FS +++D
Sbjct: 264 VEAYFSPDTVDD 275
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 328 CFRDSKDTESQWYFGRTLSPK-SIIIGTRRKEV 423
CFR + + S WY G+T +P+ I +GT +V
Sbjct: 711 CFRVTMNENSVWY-GKTCNPQLHITLGTSSSDV 742
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 242 KSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 346
K+ TL QN+ + + +GT+ FS +S++ V ++
Sbjct: 409 KTGTLTQNEMEMKKLHVGTMGFSAESMDVVQACIQ 443
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 287 LLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVS 397
+LG++ FS+ ++ + E+V L P +L+E RQ S
Sbjct: 446 MLGSIGFSRLRVKMLRELVASLTP--VLLETRRQNAS 480
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 291 KRTTVACLSFCKSVADFGKCW 229
K++ + C C S+ DF K W
Sbjct: 324 KKSLILCYVQCPSIEDFNKIW 344
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,439
Number of Sequences: 5004
Number of extensions: 61887
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -