Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26m07
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 28 0.60
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce... 27 0.80
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 27 1.1
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.1
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 26 1.8
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 1.8
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 2.4
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 2.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 2.4
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 25 3.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 4.3
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 4.3
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 24 7.4
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ... 24 7.4
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom... 24 7.4
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.9 bits (59), Expect = 0.60
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +1
Query: 46 KDSKIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEKQP 225
KD K E K S+E + K E P ++ K KE NK + KK+ ++ K+P
Sbjct: 215 KDKKEKKEGKPSQEASVKSVEKAP--KGLEGAK-KEKQNKKEKKDKKDKKDKKEKAPKEP 271
Query: 226 PK 231
PK
Sbjct: 272 PK 273
>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 27.5 bits (58), Expect = 0.80
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -1
Query: 237 QNLRRLLLEHGGQLFNVFLLFGGHFVDNLFQFIYVYIVDIRNAFEQLSRLLLGSFHFIYY 58
+++ RLL H F V++ G FV +F F+Y + + + L+ + + YY
Sbjct: 78 RDVERLLGSHRFASFCVYMFILGMFVTPIFSFLYSLLFKNLDYIQPGPTFLIFAILYQYY 137
Query: 57 F 55
+
Sbjct: 138 Y 138
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 27.1 bits (57), Expect = 1.1
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 133 DINKLKEVINKMAAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK*P 294
D+NK +V+NK+ A K + E+ +L K K L +L S +AA E + P
Sbjct: 702 DLNKCSKVMNKLRASTK--LAEV-LVLRKDTSKKLISLSLKKSLVEAAKENRMP 752
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 1.1
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 145 LKEVINKMAAEQKKNVEELTTMLEKQ 222
LKE+ K+ +Q+KN E++ T+ +K+
Sbjct: 242 LKEIHAKVTQQQRKNTEDVLTLRDKK 267
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 1.8
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +1
Query: 91 ARKLFEGVPDINNID--INKLKEVINKMA--AEQKKNVEELTTMLEKQPPKVLDALQAGA 258
+R E + D + +N+L+++ K A ++ K+ E L +L K+P +A+Q
Sbjct: 79 SRPTLENLQDRRELQEQLNELRKLSRKSAFKSQAKRETELLDEILPKEPAGSKEAMQQKK 138
Query: 259 SAFKAALE 282
+AAL+
Sbjct: 139 KEKRAALK 146
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 26.2 bits (55), Expect = 1.8
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 1 EKDGKNSVDNI---IKWMKDSKIIDEVKASEEKARKLFEGVPDINNI 132
++ K V+NI + + D K+ +KA EKARK+ V D +N+
Sbjct: 84 DEHAKPKVENIRYEVNEVIDKKVAPCIKAFNEKARKIGSKVLDGDNL 130
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 2.4
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +1
Query: 10 GKNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKN 189
G NSVD++++ K ++ E + RKL+ + L NK+ +E +
Sbjct: 296 GLNSVDSLVENAKALPLVGEYLSDYISHRKLYSSETQSQRLKREVLD--ANKIYSESVVD 353
Query: 190 VEELTTMLEKQPPKVLDALQ 249
+++ T++E+ L LQ
Sbjct: 354 LDKCRTLVEETIADHLQFLQ 373
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.8 bits (54), Expect = 2.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 168 HFVDNLFQFIYVYIVDIRNAFEQ 100
HF+ ++F FIY +V + N F +
Sbjct: 604 HFIFSVFTFIYFSLVPLNNLFHR 626
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 2.4
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 55 KIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEKQPPKV 234
K +DE+ E K +KL+ G + +L++ +M E+ + + ++ +V
Sbjct: 316 KAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEV 375
Query: 235 LD-ALQAGASAF 267
D L+A SAF
Sbjct: 376 DDERLKAEFSAF 387
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 3.2
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 151 EVINKM-AAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK 288
+VI+K+ AA K+N E + +E + LDA +AG F L KK
Sbjct: 462 DVISKLYAAHHKENGESIGVDVECENDGTLDAKEAG--IFDVLLAKK 506
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 4.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 146 NLFMSILLISGTPSNNFRAFSSEAFTSSII 57
NLF S+L T + N R F A TSS I
Sbjct: 3774 NLFDSLLSSIETATKNMRTFKELAETSSFI 3803
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 151 LSIYLCLYC*YPERLRTTFAP 89
L +Y YC Y +RT FAP
Sbjct: 399 LFVYYMRYCTYKSLMRTQFAP 419
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 4 KDGKNSVDNIIKWMKDSKIIDEVKASE 84
KDGK + I KW D K + V +
Sbjct: 303 KDGKKVIWPIFKWSADDKYLARVTVGQ 329
>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 246
Score = 24.2 bits (50), Expect = 7.4
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +1
Query: 103 FEGVPDINNIDINKLKEVINKMA-AEQKKNVE--ELTTMLEK 219
F+G PD+ + D++ L + +N++ A+ +KN + + +LEK
Sbjct: 191 FKGSPDMQSTDLDNLMKEMNQIRDADLEKNEKKAKALNLLEK 232
>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 266
Score = 24.2 bits (50), Expect = 7.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 185 FFCSAAILLITSFNLFMSILLISGTPSNN 99
F S+ +L + NLF+ IL I G NN
Sbjct: 235 FIMSSLMLYLDFINLFIRILQILGMLQNN 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,385,726
Number of Sequences: 5004
Number of extensions: 24582
Number of successful extensions: 94
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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