Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26m06
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    29   0.84 
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    28   1.1  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    27   2.6  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    26   5.9  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   7.8  

>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +3

Query: 39  LTRNFAGT-VNGIVFAMMTVAGIITPYVTAFFTK--DDETSAALWQPVFYTGGSVFMATG 209
           ++ NF G  VN IV  +  +  +   +  + F      ET+  +W   FY G  V   T 
Sbjct: 469 ISLNFDGIPVNDIVAKLPPITLVTAAWFMSAFVGILPTETALRVWDCFFYEGSKVLFMTA 528

Query: 210 LQFLFLG 230
           L  L LG
Sbjct: 529 LCILRLG 535


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 192 VFMATGLQFLFLGSTKTQYWN 254
           ++M   L FLFLG    +YWN
Sbjct: 175 LYMTIALSFLFLGGQAYEYWN 195


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 421 LSDGNHLPSDAIRCARLPVLAIKKNKNYGNLAKSP--SDAHMGSAS 552
           L++G H P  AI C   PV  +   +   NL  +   S+A + + S
Sbjct: 92  LNEGRHSPKSAISCVTQPVSPVYNTRAAANLRNNSINSEAALSTTS 137


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 234 TKTQYWNDITKEKDAEHQEKN 296
           TKTQ W ++ K+  AE + KN
Sbjct: 414 TKTQVWMELNKDYLAEEEAKN 434


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 77  VCNDDCCRNNNSLCYCLFHKGR*DKCSFMAARVLYG-RFSIHGHW 208
           +CN+  C N+N++ +C       D C+    +  YG  F   G W
Sbjct: 199 ICNEAECENSNAIVFC-------DNCNTSVHQNCYGIPFVPEGQW 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,808
Number of Sequences: 5004
Number of extensions: 58277
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)