Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26m06
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0557 + 4394754-4396040                                           34   0.12 
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106           33   0.16 
05_01_0055 - 390371-390457,390637-390715,390804-390856,390951-39...    33   0.16 
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    28   6.2  
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133...    28   8.1  

>11_01_0557 + 4394754-4396040
          Length = 428

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +3

Query: 21  AVNGHDLTRNFAGTVNGIVFAMMTVAGIITPYVT------AFFTKDDETSAALWQPVFYT 182
           AVN  D+   FAG V GI     T+AGI+   +T      A  +  D TS+  W+ VF+ 
Sbjct: 346 AVNHMDVAPKFAGIVMGISNTAGTLAGIVGVGLTGRILEAAKASNMDLTSSESWRTVFFV 405

Query: 183 GGSVFMATGLQFLFLGS 233
            G + + +   FL   +
Sbjct: 406 PGYLCIFSSFIFLIFST 422


>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
          Length = 427

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
 Frame = +3

Query: 21  AVNGHDLTRNFAGTVNGIVFAMMTVAGIITPYVT------AFFTKDDETSAALWQPVFYT 182
           AVN  D+   FAG V G+     T+AGI+   +T      A  +  D T++  W+ VF+ 
Sbjct: 345 AVNHMDVAPKFAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFV 404

Query: 183 GGSVFMATGLQFLFLGS 233
            G + + + + FL   +
Sbjct: 405 PGYLCIFSSIIFLIFST 421


>05_01_0055 -
           390371-390457,390637-390715,390804-390856,390951-391105,
           391216-391422,391518-391658,392044-392202,392296-392476,
           393153-393252,393321-393470,393581-393705,394006-394096,
           394364-394472,394558-394657,395143-395307,395401-395506,
           395590-395894,396003-396241,397036-397114,397189-397327,
           398004-398054,398316-398770,398961-399158,399199-399261,
           400212-400436,400706-400988,401109-401170
          Length = 1368

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -3

Query: 384 LISLFHSMYIQKRAHLLIIHSLSSIGM*FNFFLDVLHLSLW*YHSNIE-SLSNPGTRIAI 208
           L  L H+ Y QK AHLLII+   SI M +N   ++++  +    S+++  +SNP  RIA 
Sbjct: 180 LTDLVHADYFQKLAHLLIIYLTPSI-MIYNLNKNMVYYKI----SHVDHRISNPEQRIAS 234

Query: 207 QWP 199
             P
Sbjct: 235 DIP 237


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 367 MKQGNEVSYN-NYCFSTFNLSDGNHLPSDAIRCARLP--VLAIKKNKNYGNLA 516
           MKQ  EV+++   C  TF    G+H  +  +RC  +P  V  +K  K   NLA
Sbjct: 127 MKQVREVAFDAEDCIDTFWCYIGHHYGARGVRCYCVPKVVYTLKTLKVRNNLA 179


>05_05_0059 +
           22011168-22011662,22012668-22012894,22013029-22013377,
           22013464-22013508,22013589-22013735,22013851-22013988,
           22014126-22014159,22014258-22014430
          Length = 535

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 27  NGHDLTRNFAGTVNGIVFAMMTVAGIITPYVTAFFTK 137
           N  D+   +AG+++G+   + TVA I++   T +F +
Sbjct: 465 NVQDIAPKYAGSLHGLTNGIGTVAAIVSTIGTGYFVQ 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,818,692
Number of Sequences: 37544
Number of extensions: 355923
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)