Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26m03
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 30 0.28
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 3.4
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 27 3.4
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 27 3.4
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 27 3.4
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 4.5
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 4.5
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 26 4.5
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 5.9
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 26 5.9
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 26 5.9
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 25 7.9
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 25 7.9
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +2
Query: 476 LDDKLELSRIRTDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLK 655
LD + ++ RT ++ + + + YSS H + N + TIKE N+I+ + L
Sbjct: 481 LDSQNFIASFRTFTLAIKISLLTNKVYDMWYSSLHGKANLKAATIKEIVNEIEAWRQQLS 540
Query: 656 RKLE 667
LE
Sbjct: 541 PDLE 544
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 356 ERRNEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRI-RTDSVQEDV 532
+R N +SA++ G+E D + N V + D+K+ R+ + S ++DV
Sbjct: 1831 KRHNIDSANLSR--GTERDED---IPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQDV 1885
Query: 533 LRIQDDEETEEYSSK 577
L D+ E E+ SSK
Sbjct: 1886 LNKIDESEIEQASSK 1900
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 365 NEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQ 544
+ ESA +E S I ++ G++ PQK K +K + +V ED L +
Sbjct: 127 DSESAVVEQLHPSSPIPILTTAVRKKGSRPSKPQKEKQGNKQGSKTEESPNVDEDELESE 186
Query: 545 DDEET 559
+E+T
Sbjct: 187 PEEKT 191
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +2
Query: 422 SSLRNVDGTKGVDPQKIKLD-DKLELSRIR--TDSVQEDVLRIQDDEETEEYSSKHVRPN 592
+ R G K DP ++ L +KL +S ++ T+ + VL + E T S+ RP
Sbjct: 92 TQFREAMGQKLNDPYQVLLRRNKLPMSLLQENTEIPKVRVLESEPFENTFGPKSQRKRPK 151
Query: 593 TQTVTIKESTNQIQTRKTSLKRKLEEESAA 682
++ E + ++ + + K+EE A
Sbjct: 152 ISFDSVAELAKESDEKQNAYEEKIEERILA 181
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 494 LSRIRTDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEEE 673
LS I DS +D+ ++++ EEY+ V P V KES + R L +L E
Sbjct: 335 LSPILMDSFGDDLQKLKETYGEEEYNLYLVDPYRYRVKRKESFYDLAVRLEPLILELGRE 394
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 527 DVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEEE 673
DV+ I+ D + SSK RPN ++++ ++ R S+ K EE+
Sbjct: 97 DVVSIRQDFQ----SSKKKRPNETDISVEGVVTRVHERHISVALKSEED 141
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 4.5
Identities = 25/106 (23%), Positives = 44/106 (41%)
Frame = +2
Query: 371 ESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDD 550
+S+S E++S SED NDSSS + D + S + S D
Sbjct: 113 DSSSSESESSSED-NDSSS-SSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSS 170
Query: 551 EETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKRKLEEESAAGT 688
E+E S + ++ + + ES+++ +S E S+ G+
Sbjct: 171 SESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGS 216
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 365 NEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLR-I 541
+EE +E + +EDI + +N+D + ++ LD E +I T + + I
Sbjct: 133 DEEKDELEEERIAEDIAQNEVEQNIDDVEDLEEVNDTLDANAESPQIETIHLTDATGNPI 192
Query: 542 QDDEETEEYSS 574
+D E++ S
Sbjct: 193 EDSSESDSEES 203
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 5.9
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +2
Query: 404 EDINDSSSLRNVDGTKGVDPQKIKLDDK-LELSRIRTDSVQEDVLRIQDDEETEEYSSKH 580
++I+ SL N+D DP + K++ K L SR++ SV++ LRI T +YSS
Sbjct: 17 KEISSFGSLTNID--LHTDPYE-KVEAKALSRSRLKNQSVKKTDLRI-----TNDYSSLF 68
Query: 581 VRPNTQTVTIKE 616
V + TI +
Sbjct: 69 VSIENKKNTIPD 80
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/74 (20%), Positives = 30/74 (40%)
Frame = +2
Query: 380 SIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEET 559
S+ NK + + +NV+ +PQ+ K + LE+ + + + + +
Sbjct: 69 SVTNKIDTNKLEAKDESKNVEKDATGNPQESKQEPNLEVQQTEKEKDVDSASAENESINS 128
Query: 560 EEYSSKHVRPNTQT 601
SSK TQ+
Sbjct: 129 SSSSSKECSTQTQS 142
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 509 TDSVQEDVLRIQDDEETEEYSSKHVRPNTQTVTIKESTNQIQTRKTSLKR--KLEEE 673
T + +ED + +D+E + SK +R + Q V K + + R + LK+ KLE+E
Sbjct: 48 TSNEEEDAISDMEDKEDVSFGSKILRVSHQEVE-KPTLSATVGRVSFLKKMPKLEDE 103
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 395 SGSEDINDSSSLRNVDGTK-GVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEEY 568
S S+ + S + V T+ K + + + + + S+++D+L+ ++DEE EE+
Sbjct: 278 SQSQTVETSGPSKEVPTTQPDASAAKPRTEFDFQTANQKFQSMKDDLLKGKNDEEAEEF 336
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +2
Query: 368 EESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQD 547
E ++S+EN S DSSS + + ++P+ + D+ + + + V++D D
Sbjct: 88 ELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDE--DDKHVTVEIVEDD-----D 140
Query: 548 DEE 556
DEE
Sbjct: 141 DEE 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,190
Number of Sequences: 5004
Number of extensions: 49383
Number of successful extensions: 197
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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