Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26m02
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    29   0.63 
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    29   0.83 
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   5.8  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    25   7.7  

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
 Frame = +3

Query: 411 KCIPMTWVCEGDDDCGDNSDESIEECKESRTCTSSEFRCK-TGRC---IPLSWKCDNEKD 578
           K I    V +   DC D SDE       +  C + +F CK TG     IP +   D   D
Sbjct: 53  KLISFNQVNDDYCDCPDGSDEP-----GTSACHNGKFFCKNTGYISSYIPSNRVDDTVCD 107

Query: 579 CSDSSDEDPTVC 614
           C D SDE    C
Sbjct: 108 CCDGSDESLIKC 119



 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +3

Query: 375 ACPMKQFQCAN----GKCIPMTWVCEGDDDCGDNSDESIEECKESRTCTSSEF 521
           AC   +F C N       IP   V +   DC D SDES+ +C  +    + E+
Sbjct: 78  ACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDESLIKCPNTCAQKAREY 130


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 453 CGDNSDESIEECKESRTCTSSEFRCKTGRCIPLSWKCDNEKDCSDSSDEDPTVCKVE 623
           CGD S + +     SR   +S +   TGR + +SW   +    + S D +  +  VE
Sbjct: 496 CGDASGKVVLYDANSREVITSRWAFHTGRILGMSWNAKSTHLATASLDTNIHIYSVE 552


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
 Frame = -3

Query: 254 LTAHEKGHSSAGNF---RF*QYHFC*TLFCKILLEP--------RLCHVHNSVL 126
           L  H  G    G F   RF QY    TL CK + +P        RLC +HN +L
Sbjct: 115 LARHNIGPYLIGEFSNGRFEQYMESTTLTCKTIRDPKLSIYVGRRLCELHNFIL 168


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 533 SFATELGGRASAALFTFLYAFIRVIAAVVVSLAHPSHRYAFPVRALELLHW 381
           S    L G+A+AAL + L A   +I+     +A  +    FP R  E + W
Sbjct: 641 SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAW 691


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -2

Query: 234 TFVRWKLSILTIPLLLDTV----LQNFA*TEVMSRSQL 133
           TFVR  LS+   P LLD       QN   T+V+ RS++
Sbjct: 88  TFVRQVLSLCQYPTLLDHAEEKWFQNLFPTDVVQRSKM 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,995
Number of Sequences: 5004
Number of extensions: 63684
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)