Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26m02
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0027 + 31131621-31131676,31131681-31132350,31133152-311333... 31 1.1
02_02_0235 + 8114606-8114806,8116530-8116692,8116785-8116887,811... 30 2.0
03_05_0501 - 24944533-24945507 29 4.5
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 29 4.5
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 28 6.0
11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373... 28 6.0
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 28 6.0
03_06_0086 + 31544761-31544961,31546036-31546201,31546568-315466... 28 7.9
01_06_0891 - 32752825-32752932,32753085-32753176,32753293-327534... 28 7.9
>03_06_0027 +
31131621-31131676,31131681-31132350,31133152-31133319,
31134771-31134986,31135593-31135909,31136058-31136169,
31136256-31136492,31136582-31137172
Length = 788
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 480 EECKESRTCTSSEFRCKTGRCIPLSWKCDNEKDCSDSS 593
EECK TC + C C L W N C+ +S
Sbjct: 390 EECKIKNTCNLTSLACSKEMCFHLPWSDKNGLACNLTS 427
>02_02_0235 +
8114606-8114806,8116530-8116692,8116785-8116887,
8118584-8118650,8119923-8120486
Length = 365
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Frame = +3
Query: 387 KQFQCANGKCIPMTWVCEGDDDCGDNSDESIEECKESRT-CTSSEFRCKTGRCIPLSWKC 563
KQ +C++ + I T E D C + C E T C SSE C +
Sbjct: 94 KQNRCSSSRTITPTKEVEYRDICSTSFSVPSYRCAEQETECCSSEPSCSAQTSMRPFHSR 153
Query: 564 DNEKDCSDSSDEDPTVCKVEACGPEEFTCRGKP--GECVPLT 683
N D D + ED V + +E G P G +P+T
Sbjct: 154 HNRDDNIDMNIEDMMVMEAIWRSIQEQGSIGNPVCGNFMPVT 195
>03_05_0501 - 24944533-24945507
Length = 324
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +3
Query: 246 GCQRAAQNICGKMWWFICFLCVINVKTFGAAASNNTNV----VSENGACP 383
G AA +CG W+ +C C + + + AAA+ V +ENG P
Sbjct: 270 GAGDAACAVCGGAWFVVCGACSGSHRLYDAAAAAGGRVPCTGCNENGLVP 319
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Frame = +3
Query: 375 ACPMKQFQCANGKCIPMT----WVCEGDDDCGDNSDESIEECKESRTC 506
ACP +F C N P+T V +G DC D SDE TC
Sbjct: 75 ACPEGKFYCQNAGHSPITIFSSRVNDGICDCCDGSDEYDSNVTCKNTC 122
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 456 GDNSDESIEECKESRTCTSSEFRCK 530
G + E I+ECKE C E +CK
Sbjct: 510 GVHKCEDIDECKERTACQCKECKCK 534
>11_01_0485 +
3728686-3728863,3729933-3730095,3730508-3730549,
3730833-3730927,3731273-3731334,3731416-3731507,
3731587-3731722,3731818-3731904,3732430-3732519,
3732969-3733071,3733616-3733716,3733837-3733971,
3734006-3734093,3734484-3734544,3734626-3734689,
3735219-3735347
Length = 541
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = -2
Query: 561 ISTIMVCIFQFCNGTRRTCKCGSLYIPLCFHQSYRRSRRLPRTPKSSVCISRSRTGIASL 382
+ T+ C+ FCNG CF + RRS R S + RT + S+
Sbjct: 200 VVTVAPCLHNFCNG--------------CFSEWLRRSSANSRDKSQSAACPQCRTAVQSV 245
Query: 381 DMRHF 367
HF
Sbjct: 246 GRNHF 250
>11_01_0101 -
738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 456 GDNSDESIEECKESRTCTSSEFRCK 530
G + E I+ECKE C E +CK
Sbjct: 510 GVHKCEDIDECKERTACQCKECKCK 534
>03_06_0086 +
31544761-31544961,31546036-31546201,31546568-31546626,
31547202-31547320,31547410-31547647,31547718-31547841,
31547989-31548068
Length = 328
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 561 CDNEKDCSDSSDEDPTVCKVEACGPEEFTCRGKPGECVPLT 683
C + +S CK+ A GPE+F G G +PL+
Sbjct: 274 CSEGDNMPESFQLAEAACKLVAQGPEQFHGNGSNGWTIPLS 314
>01_06_0891 -
32752825-32752932,32753085-32753176,32753293-32753408,
32754055-32755969,32756037-32756171,32756549-32756870
Length = 895
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 435 CEGDDDCGDNSDESIEECKESRTCTSSEFRCKTGRCIPLSWKC---DNEKDCS 584
C + + GD+S+ESIE C ++ + + +C DNE CS
Sbjct: 305 CVSNTNEGDDSNESIESCPSTKAPKRKHGQFSAAEMTSGNKRCRREDNESSCS 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,958,014
Number of Sequences: 37544
Number of extensions: 436469
Number of successful extensions: 1243
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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