Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26m02
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.3  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 276 HKYFGLPVDSPRKGTFVRWKLSILTIPLLLDTVLQNF 166
           H Y  +P  +  +    R K ++L + ++L T+L+NF
Sbjct: 474 HYYAFVPFSAGPRSCVGR-KYAMLKLKIVLSTILRNF 509


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 402 ANGKCIPMTWVCEGDDDCGDNSDESIEECKESR 500
           ANG+ +    V E DDD GD+ D+   E    +
Sbjct: 381 ANGEAVGE--VDEDDDDDGDDDDDDDVEAANGK 411


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 295 INHHILPQIFWAAR*QPTKRDIRPLE 218
           +N   LPQI W  +   T+ D   +E
Sbjct: 284 MNGTTLPQIMWGTKETSTRTDAYTVE 309


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 509 RASAALFTFLYAFIRVIAAVVVSLAHPSHRY 417
           RA  A+  FL++   V    +V LA    RY
Sbjct: 45  RAGLAILLFLFSVATVFGNTLVILAVVRERY 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,916
Number of Sequences: 438
Number of extensions: 4756
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)