Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26l23
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 29 0.81
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 27 1.9
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 27 3.3
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 27 3.3
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.3
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po... 26 5.7
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 5.7
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 25 7.5
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 25 9.9
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 25 9.9
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 28.7 bits (61), Expect = 0.81
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 596 LFSRVQFDTASALPGA--CVLYGQTRDEITGGFGFLASAGCGVLSPGAPVVLKGKNFEIP 423
+ SRV T +A+ C+ G T E+ L G G+ +P+VL G+ +P
Sbjct: 229 IMSRVNIATVAAIRSVQPCIKPGITEKELAEVINMLFVYG-GLPVQESPIVLFGERAAMP 287
Query: 422 NFGPS 408
+ GPS
Sbjct: 288 HGGPS 292
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 426 YFEVLSLQHDGCARTEHAAACRRQEAEASSNLIPGLS 536
Y E L+L GC+ H +R+E E N I LS
Sbjct: 632 YRETLNLLDHGCSELHHRLKLQREEYERQQNHIYKLS 668
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 267 VRPVPVPEMRNPILRMSWWERNRKYRPTT 353
VRP E+ N + SWW+ +K R T
Sbjct: 838 VRPSKSSELENLLKDDSWWQEEKKRRGNT 866
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.3
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +3
Query: 147 RHVLSSGTEWAGPVRTVRAMRPVRTVRAVRS-LCALQAMRTVRPVPVPEMRNPILRMSWW 323
RHV SSGT PV+ R V S + L+AM TV+ + NP + S
Sbjct: 30 RHVSSSGTTLFAPVKPATKKYNYRRVSPHGSYISPLEAM-TVKLADTYSICNPKFQFS-S 87
Query: 324 ERNRKYRPTTSCKAESEHHTG 386
E+N + RP T +E H+ G
Sbjct: 88 EQNPR-RPLTK-PSEGVHNHG 106
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 343 DPRLPAKLNPNIIPANHITPAREGP---KLGISKFFPFNTTGAP-GLSTP 480
DPRL + + +P N+ +PA + P + S P N+ G+P +TP
Sbjct: 160 DPRLLPRTSQMYMPDNNYSPAVKSPAAQRRSSSYMVPANSRGSPANYNTP 209
>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 366 ESEHHTGESHYARPRGSEVGYFEVLSLQHDGCARTEHAAACRRQEAEA 509
E H E+ AR +E + + SLQHDG + AC +++A +
Sbjct: 18 ELASHIVENLPARYASAET-WKRIYSLQHDGASLQTMYLACEKEKARS 64
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -1
Query: 474 AQSGRTRRVEGKELRNTQLRTLAGGRNVIRRYDVRIQLCRKSWVCI 337
A S R E K LRN R GG+ I R++ ++CI
Sbjct: 618 ADSERFESQESKFLRNVNTRIAGGGQLSITNEKPRVRSLYLMFICI 663
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 214 TGRMARTVRTGPAHSVPLDNTCR*RGKDRRTSTHRDSNS 98
T + R+ + G HSVP+ T R R + H + +
Sbjct: 59 TSKRGRSTKAGSVHSVPMKRTKRVRRTPAQRIEHENKEN 97
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 321 WERNRKYRPTTSCKAESEHHTGESHYARPRGSEVGYFEVLS 443
W + RK R T A S H + + P G FEV S
Sbjct: 119 WAKRRKPRTTVESNASSSHLVSKPESSHP---STGSFEVKS 156
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = -2
Query: 662 AQDDACREHGDCLFTMASQALGLFSRVQFDTASALPGACVLYGQTRDEITGGFGFLA 492
A ++ +E G + M + G+ + + LPG ++ G + G FG LA
Sbjct: 97 ALENNIKEFGLTYYGMNDRRQGIVHVIGPEQGFTLPGTTLVCGDSHTSTHGAFGALA 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.129 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,650
Number of Sequences: 5004
Number of extensions: 39713
Number of successful extensions: 77
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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