Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26l23
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0376 + 24487870-24488571                                         32   0.48 
10_06_0182 - 11552540-11552606,11552692-11552787,11553458-115535...    31   0.63 
06_01_0647 - 4683689-4683988,4684349-4684489                           29   4.5  
03_05_0345 + 23325842-23325964,23326384-23326828,23326965-233271...    29   4.5  
12_01_0852 + 7994417-7994659,7995651-7995740                           28   5.9  
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645...    28   5.9  
02_02_0628 + 12365109-12365150,12366315-12366411,12366489-123665...    28   5.9  
01_06_0334 - 28531499-28531810                                         28   5.9  
11_06_0201 + 21178784-21179047,21179519-21180064                       28   7.8  
09_04_0460 - 17779111-17780184                                         28   7.8  

>05_05_0376 + 24487870-24488571
          Length = 233

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
 Frame = -3

Query: 667 ERHKTTLAASTATVCLLWHPKH--WVCSQGCSSTQPRRCPGLACYTDK-----PGMRL-- 515
           +R  + +AA+ ATV LL+   H    C  G ++    R P  +C         PG RL  
Sbjct: 6   QRLVSGVAAAAATVSLLYLISHASTSCFPGATTLPLARFPRTSCDAASRRVVPPGRRLAK 65

Query: 514 LEASASWRRQAAA 476
           L ASA WRR++ A
Sbjct: 66  LRASARWRRRSVA 78


>10_06_0182 -
           11552540-11552606,11552692-11552787,11553458-11553528,
           11553660-11553764,11554149-11554239,11554331-11554381,
           11554478-11554566,11554667-11554909,11555027-11555190,
           11555883-11555988,11556075-11556242,11557456-11557494,
           11557582-11557713
          Length = 473

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 288 EMRNPILRMSWWERNRKYRPTTSCKAESEHHTGESHYARPRGSEVG 425
           E  N  L   W E NR+ R   S +   E  + +  ++RPRGS++G
Sbjct: 345 ENPNAALLFYWNEMNRQVRVEGSVQKVPEEESEKYFHSRPRGSQLG 390


>06_01_0647 - 4683689-4683988,4684349-4684489
          Length = 146

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 577 STQPRRCPGLACYTDKPGMRLLEASASWRRQAAACSVR 464
           S  PR   G++C+  +PG+    A      + AAC VR
Sbjct: 106 SVAPRTNTGMSCHWQRPGIAAGRAEKKKGERKAACRVR 143


>03_05_0345 +
           23325842-23325964,23326384-23326828,23326965-23327188,
           23327665-23328171,23328482-23328742
          Length = 519

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +3

Query: 375 HHTGESHYARPRGSEVGYFEVLSLQHDGCARTEHAAACRRQEAEASSNLIP 527
           HH  E+     R  E   FEVL L  DGC +    A  ++  +    N  P
Sbjct: 93  HHIEENDSLLFRHIENSRFEVLILDSDGCEKVFTCAGIKKTSSVQERNAAP 143


>12_01_0852 + 7994417-7994659,7995651-7995740
          Length = 110

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 384 GESHYARPRGSEVGYFEVLSLQHDGCARTEHAAACRRQEAEASSNLIPGLSV*HASPGQR 563
           G     R  G++  Y E+  L      RT  AAA R   A+     + G+S   +  G+R
Sbjct: 9   GARRQRRDEGNDKNYGELAPLTALAGQRTYSAAANREGSADKHGGAVSGVSTCRSRIGER 68

Query: 564 R 566
           R
Sbjct: 69  R 69


>06_02_0064 +
           11062798-11063568,11064212-11064261,11064354-11064510,
           11064598-11064816,11065301-11065429,11066502-11068031,
           11068654-11069013,11069086-11069205,11069727-11069897,
           11070022-11070180,11070327-11070452,11070660-11070968
          Length = 1366

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 316 PGGSAIENTDPRLPAKLNPNIIPANHITPAREGPKLGISKFFPFNTT 456
           PG  A+ + D RLP +  P  +    IT     P L + +    N T
Sbjct: 182 PGDRAVHDVDSRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRT 228


>02_02_0628 +
           12365109-12365150,12366315-12366411,12366489-12366554,
           12367884-12367963,12368051-12368125,12368232-12368381,
           12369816-12369881,12370141-12370206,12370653-12370763,
           12370917-12371003,12371087-12371193,12372141-12372255,
           12372472-12372537,12373521-12373615,12373700-12373880
          Length = 467

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 219 TVRAVRSLCAL-QAMRTVRPVPVPEMRNPILRMSWWERNRKYRPTTSCKAESEHHTGESH 395
           T+RA  ++ A+ Q +R   P+ + + +   + +SW E+ +K  PTT+    S+  T  + 
Sbjct: 364 TMRAYNNILAMAQPLRAKSPLFIGDKK---ITLSWMEQPKKPAPTTTGGKRSQPATNGNT 420

Query: 396 YARPRGSEVG 425
            A  +G   G
Sbjct: 421 PASKKGRGEG 430


>01_06_0334 - 28531499-28531810
          Length = 103

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 649 LAASTATVCLLW-HPKHWVCSQGCSSTQPRRCPGLACYTDKPGMRLLEASASWRRQAAAC 473
           LA       +LW       C  G  +   +RC  L  Y   P +R    S + R+ AAAC
Sbjct: 41  LALRPCAAAILWGEAPSTACCAGLRAQ--KRC--LCRYAKNPDLRKYINSQNSRKVAAAC 96

Query: 472 SVRAHPSC 449
           SV A P C
Sbjct: 97  SVPA-PRC 103


>11_06_0201 + 21178784-21179047,21179519-21180064
          Length = 269

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 216 RTVRAVRSLCALQAMRTVRPVPVPEMRNPILRMSWWERNRKYR 344
           R  RA  + C ++A     P  VP +    L  SWW +  + R
Sbjct: 169 RNPRAFLASCRVEAETAEAPRRVPVLAAEFLASSWWRKKMEAR 211


>09_04_0460 - 17779111-17780184
          Length = 357

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 310 VCPGGSAIENTDPRLPAKLNPNIIPA--NHITPAR 408
           VCPGGS  E  +P  P+ + P +  A  +H  P R
Sbjct: 28  VCPGGSCYEIAEPPPPSPVVPRVDVAVDDHHLPVR 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.129    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,940
Number of Sequences: 37544
Number of extensions: 335737
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)