Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26l23
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    29   3.0  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    28   5.3  
AL031630-20|CAE17995.1|  122|Caenorhabditis elegans Hypothetical...    27   9.2  
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    27   9.2  

>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical protein
            C49C3.4 protein.
          Length = 1566

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
 Frame = +1

Query: 430  SKFFPFNTTGAP---GLSTPQPADAXXXXXXVISSLVCPYSTQAPGSAEAVSNCTLENKP 600
            ++FFPF T+ AP      TP  +D          S +CP   Q  GS  ++ NC+  +  
Sbjct: 1493 TRFFPFGTSSAPVCQNGGTPIQSD---------GSCLCPSGFQ--GSDCSLVNCSQSSTS 1541

Query: 601  NAWD--AIVNK--QSPCSRQASS 657
            NAW    + N+   + C+RQ +S
Sbjct: 1542 NAWSDVCVCNEIDDATCARQFTS 1564


>AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical
           protein R02D3.1 protein.
          Length = 934

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 529 VCPYSTQAPGSAEAVSNCTLENKPNA-WDAIVNKQSPCSRQASSC 660
           +C  S    GS E +  CT  +KP A +DA  N  S     AS C
Sbjct: 356 LCDISADPGGSVEFMRECTTIDKPFAIYDADFNTSSDSFDAASGC 400


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -3

Query: 493 RRQAAACSVRAHPSC*RERTSKYPTSDPRGRA*CD--SPV*CSDSALQEVVGLYFRLRSH 320
           +RQ+  C+ R  PSC  +RT+ Y T   +    C   +PV  S S  Q V    +++++ 
Sbjct: 44  KRQSCGCAPRVQPSCSCQRTT-YTTQPQQYSCSCQNTAPVQASCSCAQPVQHQSYQVQTS 102

Query: 319 Q 317
           Q
Sbjct: 103 Q 103


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/74 (28%), Positives = 30/74 (40%)
 Frame = +1

Query: 367 NPNIIPANHITPAREGPKLGISKFFPFNTTGAPGLSTPQPADAXXXXXXVISSLVCPYST 546
           +PN  P   ITP      LG S     +TT  P  STP+ +          +S     S+
Sbjct: 412 SPNSTPTTTITPGAPSSTLGSSSSTIVSTTITP--STPKVSTLTLSQSPTPTSTPLVVSS 469

Query: 547 QAPGSAEAVSNCTL 588
            + GS+  V   T+
Sbjct: 470 SSSGSSSTVVTSTI 483


>AL031630-20|CAE17995.1|  122|Caenorhabditis elegans Hypothetical
           protein Y38H6C.23 protein.
          Length = 122

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 595 CSQGCSSTQPRRCPGLACYTDKPGMRLLEASASWRRQA 482
           C +   ST P RC    CY DK G  +    ++  +QA
Sbjct: 54  CMEDPKSTTPIRCVCEKCYIDKNGRAVYPGESTDNQQA 91


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 549 SPGQRRGCVELHP*EQTQCLGCHSK 623
           S G++R C+  H  EQT+C  C S+
Sbjct: 60  SQGRQRFCIVSHLEEQTKCFYCDSR 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.129    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,693,397
Number of Sequences: 27780
Number of extensions: 257603
Number of successful extensions: 631
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)