Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26l17
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   144   4e-36
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   144   4e-36
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    65   4e-12
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   1.4  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   1.8  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   5.5  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    24   7.2  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    24   7.2  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    24   7.2  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   9.5  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    24   9.5  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    24   9.5  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  144 bits (349), Expect = 4e-36
 Identities = 65/72 (90%), Positives = 70/72 (97%)
 Frame = +1

Query: 1   LAKVQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 180
           +AKV RAVCMLSNTT+IAEAWSRL+HKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 372 IAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAA 431

Query: 181 LEKDYEEVGMDS 216
           LE+DYEEVG DS
Sbjct: 432 LERDYEEVGQDS 443


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  144 bits (349), Expect = 4e-36
 Identities = 65/72 (90%), Positives = 70/72 (97%)
 Frame = +1

Query: 1   LAKVQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 180
           +AKV RAVCMLSNTT+IAEAWSRL+HKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 IAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAA 427

Query: 181 LEKDYEEVGMDS 216
           LE+DYEEVG DS
Sbjct: 428 LERDYEEVGQDS 439


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 64.9 bits (151), Expect = 4e-12
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
 Frame = +1

Query: 10  VQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAA 180
           ++ +   + N+T+I E + RL  +F  M+ ++AF+HWY GEGM+E EF+EA     DL +
Sbjct: 361 LKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 181 LEKDYEEVGMD 213
             + Y+E G+D
Sbjct: 421 EYQQYQEAGID 431


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 254 FTIYF-LGCLWIL-LRSRVCFSLWLFFIVMLRYGFS 355
           F IYF L   WI   RSR CF L L F + +  GFS
Sbjct: 557 FNIYFPLMSPWIQRFRSRCCFRLGLLFSIFV-VGFS 591


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = -2

Query: 387 FFEKYTCTFY*LKP*RNITMKNNHNEKHTLDLSKIQRHPKK*IVKLIFLAAFSLALTGIH 208
           FF  +  T Y L     I  + +  +   L  SK++  PK  I K++    F L     H
Sbjct: 259 FFRTHLITLYELLSEVRINEEEDRVKLKQLLSSKLEVIPKNYIQKVVLNILFLLLSIDTH 318

Query: 207 SHLFVVFLEGGQILTG 160
           S +  +  +  QI+ G
Sbjct: 319 SDVVELLFKCAQIVKG 334


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = +1

Query: 64  SRLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 186
           ++LN  + + ++K +++   + +G +EG+ S  ++ L A E
Sbjct: 551 TKLNISYSVEWSKSSWLKGPIEKGAQEGQASYVKDLLTAFE 591


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 146 ASFQKPVRIWPPSRKTTKR 202
           A+ + P+RIW P R  TK+
Sbjct: 145 ATKEHPLRIWVPRRSPTKQ 163


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 342 RNITMKNNHNEKHTLDLSKIQRHPKK*IVKLI 247
           +N    N H+EK  LDL K +   K  +++L+
Sbjct: 513 KNSRSYNIHSEKELLDLFKDEEFGKADVIQLV 544


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 285 FCLGLECVFRYGYFSLLCYVMVL 353
           FC  L C+  Y YFSL    M++
Sbjct: 207 FCCVLWCLDDYWYFSLFSMFMII 229


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 302 VCFSLWLFFIVMLRYGFS 355
           VCFS   FF   L YGFS
Sbjct: 150 VCFSNQKFFYQFLFYGFS 167


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 276 VFGFCLGLECVF 311
           + G C+GL+C+F
Sbjct: 104 ILGVCMGLQCIF 115


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 130 EGMEEGEFSEAREDLAALEKDYEEV 204
           E MEE   SEA E++   + D+ E+
Sbjct: 241 EAMEEEALSEAEENIPKKKPDFNEL 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,493,970
Number of Sequences: 5004
Number of extensions: 27152
Number of successful extensions: 93
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)