Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26l17
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   3.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   3.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.0  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   5.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   5.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   8.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   8.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   8.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 142 PPSPLPRTNARMHA 101
           PP P P   ARM A
Sbjct: 385 PPGPTPAQKARMRA 398


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 255 KLIFLAAFSLALTGIHSHL 199
           K + LAAFSL LT I  +L
Sbjct: 312 KSLALAAFSLMLTSILRYL 330


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 4/10 (40%), Positives = 9/10 (90%)
 Frame = +2

Query: 302 VCFSLWLFFI 331
           VC+ +W++F+
Sbjct: 218 VCYGIWVYFV 227


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 342 RNITMKNNHNEKHTLDLS 289
           + I + NN N++ T+D+S
Sbjct: 361 KRIALNNNANDRLTVDVS 378


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 4/10 (40%), Positives = 9/10 (90%)
 Frame = +2

Query: 302 VCFSLWLFFI 331
           VC+ +W++F+
Sbjct: 94  VCYGIWVYFV 103


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 339 YVMVLVNKMYKCI 377
           Y++VL NKM K +
Sbjct: 377 YILVLSNKMQKMV 389


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 339 YVMVLVNKMYKCI 377
           Y++VL NKM K +
Sbjct: 377 YILVLSNKMQKMV 389


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 339 YVMVLVNKMYKCI 377
           Y++VL NKM K +
Sbjct: 377 YILVLSNKMQKMV 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,185
Number of Sequences: 438
Number of extensions: 2053
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)