Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26l15
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    52   6e-08
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.15 
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    28   1.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    28   1.4  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   1.9  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   4.3  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    25   9.9  

>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 171

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
 Frame = +2

Query: 257 LSSRRPWTQFVATDNFKVPVSIPRLSRRFYRNIEYFQANYLIVFLGLFAYCLITSPLLLI 436
           LS  +   +F+       P +      R   N   F +NYL +   L  Y LI +PLLLI
Sbjct: 26  LSGFKSVGEFLDVRRISRPRNFSEAQSRISFNFSRFSSNYLAIIAMLVIYALIRNPLLLI 85

Query: 437 TM---VASFFGYRKLTSGPNTWKIGGWELTKTQQYVIAAAGSMALCWLAGAGAVLFWVLG 607
            +   V   +G RKL       ++    ++    YVI A   + L   A     + W++G
Sbjct: 86  VIGIGVGGVYGIRKLQGA--DLQLSHRVISNQNLYVILACVLIPLGLFASPIETIIWLVG 143

Query: 608 ATVTVVALHASFFD 649
           A+   V  HA+FF+
Sbjct: 144 ASCVCVFGHAAFFE 157


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -2

Query: 171 FFSVVAFISPDRSIFTFSDILGIF*FCVQYISII**VHYLLFYFGCMCCLIFFL 10
           FF ++ F+S     F+FS +  +    + Y S    +H+L F+F C+C  + FL
Sbjct: 120 FFFLLFFLSFS---FSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFL 170


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -1

Query: 103 FLILCTVYKYYLVG-----TLFIILFWLYVLFNIFFAKY 2
           F I CT+  YYLV      T+FI L+ +     I F+ +
Sbjct: 410 FSIFCTIAAYYLVSSSTKITVFIFLYLMLTFIGIIFSTF 448


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 124 IFRHFRDFLILCTVYKYYLVG 62
           +FRHF D +++C    Y L+G
Sbjct: 206 VFRHFVDLILMCDFCSYILMG 226


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +2

Query: 272 PWTQFVATDNFKVPVSIPRLSRRFYRNIEYFQANYLIVFLGLFAYCLITSPLLLITMVAS 451
           P+ Q      F  P S  RLS  FY+N+ Y    YL++    F  C++ + L       S
Sbjct: 136 PFVQGYMESKFSTPRS--RLSDSFYKNLRY----YLLL---TFLTCVVIAYLRFALRTMS 186

Query: 452 FFGYRKL 472
           F  +++L
Sbjct: 187 FSNFKEL 193


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 222 RTCCNNNSASFTYFWKPFFS 163
           R CCN N A F   W+  FS
Sbjct: 641 RWCCNENPALFRERWEKLFS 660


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 107 PKMSENVKIDLSGEINATTEKKGFQKYVNDAELLLQ 214
           PK+ +  K+  SGEIN   EKK ++K   D    L+
Sbjct: 586 PKLPDFEKLS-SGEINEEEEKKIYKKLKKDLSKRLE 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,821
Number of Sequences: 5004
Number of extensions: 62588
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)