Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26l15
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.38 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.87 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.87 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.87 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.87 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 245 TMQEPHHYVHAATTILHHSH 186
           TM  PHH+ H  T  L H H
Sbjct: 346 TMGPPHHHHHHQTQSLQHLH 365


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 272 PWTQFVATDNFKVPVSIPRLSRRFYRN--IEYFQANYLIV 385
           P T F+   +FK P+     + R YRN  + Y    +LI+
Sbjct: 145 PDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL 184


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 272 PWTQFVATDNFKVPVSIPRLSRRFYRN--IEYFQANYLIV 385
           P T F+   +FK P+     + R YRN  + Y    +LI+
Sbjct: 145 PDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL 184


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 272 PWTQFVATDNFKVPVSIPRLSRRFYRN--IEYFQANYLIV 385
           P T F+   +FK P+     + R YRN  + Y    +LI+
Sbjct: 196 PDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL 235


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 272 PWTQFVATDNFKVPVSIPRLSRRFYRN--IEYFQANYLIV 385
           P T F+   +FK P+     + R YRN  + Y    +LI+
Sbjct: 145 PDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL 184


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 230 HHYVHAATTILHHSHT 183
           HH+ HAAT   HH H+
Sbjct: 432 HHHSHAATP--HHQHS 445


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 140 SGEINATTEKKGFQKYVNDAELLLQHVR 223
           SGE     E+  + K +++  LLLQHV+
Sbjct: 751 SGEYEELRER-AYTKILSNGTLLLQHVK 777


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 140 SGEINATTEKKGFQKYVNDAELLLQHVR 223
           SGE     E+  + K +++  LLLQHV+
Sbjct: 747 SGEYEELRER-AYTKILSNGTLLLQHVK 773


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
          protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 70 LVGTLFIILFWLYVLFNI 17
          LVG LF+IL +L V  NI
Sbjct: 27 LVGFLFLILIFLSVAGNI 44


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 76  YYLVGTLFIILFW 38
           + ++GT+F+ LFW
Sbjct: 212 FAMIGTIFLWLFW 224


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -3

Query: 104 FSNFVYSI*VLFSRYTIYYFILVVCVV*YFF 12
           F    Y+  V+     +YY +++   + YFF
Sbjct: 59  FKGIGYAAAVMSCWMNVYYIVILAWAIFYFF 89


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 97  ILCTVYKYYLVGTLFIILFWLYVLFNI 17
           + C     Y++  +FIILF+  +L +I
Sbjct: 221 VTCIFIWAYVIPLIFIILFYSRLLSSI 247


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 58  LFIILFWLYVLF 23
           LFIIL+W  +LF
Sbjct: 376 LFIILYWPILLF 387


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 530 TAVFSLTPNHQSSKYSALKLIFYIQRN 450
           TA +S +     ++YS L + F++QR+
Sbjct: 186 TANYSASTTLSHAEYSMLLVYFHLQRH 212


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 97  ILCTVYKYYLVGTLFIILFWLYVLFNI 17
           + C     Y++  +FIILF+  +L +I
Sbjct: 221 VTCIFIWAYVIPLIFIILFYSRLLSSI 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,142
Number of Sequences: 438
Number of extensions: 4380
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)