Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26l14
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce...    62   7e-11
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    29   0.74 
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    28   1.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.3  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    27   2.3  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    27   3.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   4.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.0  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   6.9  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   6.9  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   9.1  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   9.1  

>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 104

 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 31/56 (55%), Positives = 38/56 (67%)
 Frame = +3

Query: 225 AQLSEESVERVAVITLRPTRTEPRKKVVWTEDTVDNEHMNKKKSKCCCIYEKPRRF 392
           A +S E  E V  + L+P   EP ++V WT  TVDNEHMNKKKSK CCI+ K R+F
Sbjct: 25  ASISHEESENV--LHLQP---EPVRRVRWTVSTVDNEHMNKKKSKVCCIFHKQRKF 75


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 444 HVERRHRHPPASTPAAQLATEAESPACITLQPPEPSP 554
           H++R+ R PP S P+    T + S    TL+P   SP
Sbjct: 410 HIKRKSRSPPQSLPSTPFPTSSSSTNG-TLEPNANSP 445


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -2

Query: 234 TVERGRSLQQYWSSPFL---LFYAVDRPSSPISLKQYFKSYKPII 109
           TVER R +Q++ S PF    +F  ++     +SLK   +S+K I+
Sbjct: 449 TVERARKVQRFLSQPFAVAEVFTGIE--GRLVSLKDTIRSFKEIL 491


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 210  QQYWSSPFLLFYAVDRPSSPISLKQYFK 127
            +QYW+ P   FY+   PS  I ++   K
Sbjct: 3117 RQYWTPPVYNFYSDPNPSKAIEVRDLIK 3144


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 390 NDEASRIYNNI*ISFCSCVHCRLC 319
           NDEAS       I+  +CVHC+ C
Sbjct: 584 NDEASSYGKRFVINSQNCVHCKTC 607


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 206 STGRRHFFCSMLSIAHQARFHLSNILNHTSQLLMHIFIYIVKLF 75
           ++ +RH     ++ A QAR  L+NI   T  LL+ + + + +L+
Sbjct: 170 ASAKRHLTDDAVAFARQARVALTNITT-TDSLLILVLLAVTQLY 212


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 465 HPPASTPAAQLATEAESPACITLQPPEPSPPDGAP 569
           HP A  P A     A + A +   PP+  P +G P
Sbjct: 231 HPMAGQPIAIAPVPAPNQAALPPIPPQALPANGTP 265


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 468  PPASTPAAQLATEAESPACITLQPPEPSPPDGAP 569
            P +++PAA LA     P   +  PP P P   AP
Sbjct: 999  PVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAP 1032


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 312 SRQPSSEVQSESASELLQLHAP 247
           SRQPS  V S+S   +++ H+P
Sbjct: 283 SRQPSPLVSSKSTDNIIRSHSP 304


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 296 PRFSPSRPQSYYSYTLHGFLRQLSGDGRYSSTGRR 192
           PR +PS P S     L+  +R    DG  + TG R
Sbjct: 18  PRAAPSSPVSTNGSPLNNLVRSRLSDGALNFTGGR 52


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +3

Query: 264 ITLRPTRTEPRKKVVWTEDTVDNEHMNKKKS 356
           ++ +P      KK +W    ++ EH + KK+
Sbjct: 232 VSAKPPNKSELKKYIWNRSVLNKEHGSLKKA 262


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 468 PPASTPAAQLATEAESPACITL-QPPEPSPPDGAPTHT 578
           PP+  P  ++A+  + P C T+ + P+ S  +  PT T
Sbjct: 34  PPSPIPNDKVASTVDVPKCSTIPESPKDSIVEPKPTAT 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,195
Number of Sequences: 5004
Number of extensions: 37631
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)