Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26l13
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286...    29   5.1  
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689...    28   8.9  
02_05_0424 + 28841562-28841569,28841636-28841714,28841826-288418...    28   8.9  
01_01_0018 + 139150-140415                                             28   8.9  

>03_01_0369 -
           2863159-2863491,2864149-2864214,2865045-2865140,
           2865530-2865632,2865771-2865838,2866570-2866712,
           2867050-2867242,2867602-2867640,2867742-2867807,
           2868617-2869651
          Length = 713

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 556 PEKDSPGIWLTDSLLRRSLSCP 621
           P    PG+ LTD LLRR+ +CP
Sbjct: 25  PVASDPGLSLTDLLLRRADACP 46


>10_08_0607 +
           19168164-19168358,19168594-19168716,19168791-19168946,
           19169129-19169314,19169467-19169583,19169721-19169774,
           19169854-19169925,19170430-19170535,19170658-19170754,
           19171090-19171184,19172318-19172420,19172699-19172886,
           19174928-19175183,19177187-19177325
          Length = 628

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +2

Query: 101 IRPKIFFFEIYNGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLDNTQDPSRSERAA 274
           + P +F   +Y G       P+   S    S  R Q++    +WL   Q+P+ S R +
Sbjct: 383 VYPDVFMTNLYYGGTRIAGDPSNCSSPAAVSTVRKQIASHISLWLSQCQEPTSSRRTS 440


>02_05_0424 +
           28841562-28841569,28841636-28841714,28841826-28841894,
           28841965-28842054,28842132-28842270,28842523-28842625,
           28842708-28842760,28842849-28842915,28843087-28843195,
           28843588-28843653,28843740-28843808,28843893-28843959,
           28844038-28844154,28844433-28844656,28845083-28845094
          Length = 423

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 444 SVRSDGAEILRILVSWDACKRDR 376
           SV S+  +++  L SWD CKR +
Sbjct: 251 SVSSEAVDLISSLCSWDPCKRPK 273


>01_01_0018 + 139150-140415
          Length = 421

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = +1

Query: 142 WI*SVSPNRIIFLGTRV---IVPSTSIGSAIRMARQHTRSFSIRACS-IQRGWCYPIERP 309
           W  + S NR I L T +   I  + S    + +   H        CS +    C  +++P
Sbjct: 86  WASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREKHKSTPCSTLTTKRCRLVDQP 145

Query: 310 MTSRSTVQHRTR*TS*THVSVMAIPFT 390
            TSR   QH+    + T+    AIP T
Sbjct: 146 STSRPPYQHQLPLFAPTYTP--AIPIT 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,006,805
Number of Sequences: 37544
Number of extensions: 470732
Number of successful extensions: 1172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)