Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26l12
(222 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 0.59
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 25 1.8
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 1.8
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 3.1
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 23 5.5
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 23 5.5
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 23 5.5
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|... 23 5.5
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 23 7.2
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 23 7.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 23 7.2
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 22 9.5
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei... 22 9.5
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 22 9.5
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 22 9.5
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 0.59
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 94 YEITPNLLFKNQELVFRDPPSACAATPTSTY 186
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 106 PNLLFKNQELVFRDPPSACAATPT 177
P + K E + RDPP A PT
Sbjct: 4 PKRIIKEIETLTRDPPPGIVAAPT 27
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 1.8
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 74 TLC--APVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLV 196
T+C AP + L ++C+K+ C + PR PR+ HL+
Sbjct: 551 TICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRNPRN-HLL 592
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 148 PPSACAATPTSTYSPSED 201
PPSA + P+S+ SPS D
Sbjct: 374 PPSATSFQPSSSRSPSVD 391
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 67 VPFLKFDRSRSIAVLPS 17
+PF KF S +++++PS
Sbjct: 577 IPFSKFSSSENLSLIPS 593
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Frame = +1
Query: 58 KKAHTYPLCSRDYEIT---PNL 114
KK +YP+ + D+EIT PNL
Sbjct: 416 KKQPSYPVLTSDFEITDAGPNL 437
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 142 RDPPSACAATPTSTYSPSEDHIIEQN 219
R PP + +TP T S S + +E N
Sbjct: 416 RSPPQSLPSTPFPTSSSSTNGTLEPN 441
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 2/19 (10%)
Frame = +1
Query: 124 NQEL--VFRDPPSACAATP 174
N+EL + +DPPS+C+A P
Sbjct: 7 NRELADLGKDPPSSCSAGP 25
>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 124 NQELVFRDPPSACAATPTSTYSPSEDHIIEQNV 222
N EL PS+ AATPT + S +I +
Sbjct: 75 NDELAESSKPSSGAATPTRSAPKSSAGLINSGL 107
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 97 EITPNLLFKNQELVFRDPPSACAATPTSTY 186
E TP +NQ L F P A PT+ +
Sbjct: 166 EYTPLANRQNQNLAFDSPTEALPPKPTTPW 195
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 175 WELRHTRMGDHETL 134
W LRH GD ET+
Sbjct: 490 WVLRHVVFGDDETI 503
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 66 THLPSVLP*LRNYSKSPVQKSGVSVS*SPIRVCRNS 173
+H PSV P ++ KSPV + + +P+ R++
Sbjct: 714 SHSPSVSPVGFSFDKSPVTTPPLPTAPAPVITSRHA 749
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 22.2 bits (45), Expect = 9.5
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +2
Query: 155 PRVPQLPPRH 184
P +P+LPP+H
Sbjct: 424 PAIPKLPPKH 433
>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 137 CFVIPHPRVPQLPPRHI 187
C+V H P L PR+I
Sbjct: 154 CYVSAHAAAPGLDPRYI 170
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 174 GSCGTRGWGITKH 136
G+CG G G+T+H
Sbjct: 307 GTCGRTGKGLTEH 319
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +1
Query: 94 YEITPNLLFKNQELVFRDP 150
Y + PNL+F + +++ R P
Sbjct: 204 YPLNPNLIFIDTDVIVRAP 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,041,657
Number of Sequences: 5004
Number of extensions: 19560
Number of successful extensions: 47
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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