Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26l12
         (222 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127     27   1.5  
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397...    27   1.5  
05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355...    27   2.7  
03_05_0632 + 26264150-26264195,26266139-26266623,26266650-262667...    26   4.7  
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42...    26   4.7  
04_04_0237 + 23831949-23832354,23833970-23835166,23835274-238354...    25   6.2  
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675...    25   8.3  
07_03_1155 - 24413270-24413728                                         25   8.3  

>05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127
          Length = 649

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 126 IFEQEIWSNFVITGAQRVGVCLF*NSIDHV 37
           +FEQ I SN ++T A   GV    NS+ H+
Sbjct: 20  LFEQVIGSNVIVTEAPLTGVTAEGNSVLHI 49


>03_05_0791 +
           27736978-27737217,27737648-27739191,27739512-27739763,
           27739844-27739954,27740042-27740102,27740373-27740558
          Length = 797

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 121 KNQELVFRDPPSACAATPTSTYSPSEDHIIEQN 219
           K + + F DP   C    T T +P  DH+  +N
Sbjct: 604 KKEPIGFLDPTQICQTQHTVTLAPGSDHLKGKN 636


>05_01_0445 +
           3547176-3547577,3548625-3549557,3550246-3550524,
           3550624-3550752,3550813-3550869
          Length = 599

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 149 PHPRVPQLPPRHIHLVKI 202
           PHPR P L PR +H +++
Sbjct: 23  PHPRRPGLRPRRLHRLRL 40


>03_05_0632 +
           26264150-26264195,26266139-26266623,26266650-26266739,
           26266821-26267189
          Length = 329

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 130 ELVFRDPPSACAATPTSTYSPSEDHIIEQ 216
           E+ +  PP+A  +T   T +P+ +H++ +
Sbjct: 156 EMAYGSPPAAGGSTTRKTSAPTLEHVVAE 184


>01_01_0056 +
           422141-422379,422524-422620,422697-422774,422871-422930,
           423019-423123,423743-423856,424145-424186,424380-424496,
           424568-424755,425502-425785,425869-425990,426118-426160,
           426265-426356,427331-427379,427623-427693,427793-427912,
           428586-428674,429266-429311,429926-429973
          Length = 667

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 12  DPLGRTAIERDRSNFKKGTHLPSVLP*LRNYSKSPVQKSG 131
           DPLG+  +  ++SN    T  P   P +++   SPVQ  G
Sbjct: 275 DPLGKALVTSNKSNLDIVTQTP--YPHIQSPMSSPVQVRG 312


>04_04_0237 +
           23831949-23832354,23833970-23835166,23835274-23835453,
           23835537-23835823,23835912-23836029,23836354-23836483,
           23836693-23836861,23836926-23836991,23837466-23837738,
           23838131-23838349
          Length = 1014

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 191 GEYVEVGVAAHADGGSR 141
           GE VEVGVA   +GG R
Sbjct: 66  GEAVEVGVARRREGGGR 82


>08_02_0167 -
           13564466-13566227,13566361-13566644,13566684-13567540,
           13567684-13567957,13567973-13568218
          Length = 1140

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 13  IHWAELR*NVI-DRISKKAHTYPLCSRDY--EITPNLLFKNQELVFRDPPSACAATPT 177
           IH+   + NV+ D +S+K H   LC R    E+   L   N  +V     +A  A PT
Sbjct: 624 IHYHPSKANVVADALSRKGHCSTLCVRGIPPELNQQLEALNLSVVSHGFLAALEAKPT 681


>07_03_1155 - 24413270-24413728
          Length = 152

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 149 PHPRVPQLPP 178
           PHP VP+LPP
Sbjct: 75  PHPAVPELPP 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,132,557
Number of Sequences: 37544
Number of extensions: 136490
Number of successful extensions: 391
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)