Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26l12
         (222 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   1.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   3.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    19   9.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    19   9.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   9.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   9.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    19   9.5  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 143 VIPHPRVPQLPPRHIHLVKIT 205
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 220 HFVRLCDLH*VNMSRWEL 167
           +F+++C ++ VNM+  EL
Sbjct: 130 NFIKVCSVNDVNMTITEL 147


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 89  VITKLLQISC 118
           +I KLLQI+C
Sbjct: 472 IIKKLLQINC 481


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 120  EQEIWSNFVITGAQRVG 70
            +Q +   F +TG+ RVG
Sbjct: 1280 QQHVEYQFWVTGSTRVG 1296


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 120  EQEIWSNFVITGAQRVG 70
            +Q +   F +TG+ RVG
Sbjct: 1276 QQHVEYQFWVTGSTRVG 1292


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 143 VIPHPRVPQLPPRHIHL 193
           V PH R    P +H H+
Sbjct: 42  VRPHWRAFPAPGKHFHI 58


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 148 PPSACAATPTS 180
           P  ACAA P+S
Sbjct: 347 PSLACAAEPSS 357


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 158 RVPQLPPRHI 187
           R+P LPP+ I
Sbjct: 636 RLPPLPPKRI 645


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 148 PPSACAATPTSTYSPSEDH 204
           PPSA     T T+    DH
Sbjct: 300 PPSATLVGTTITHLRDPDH 318


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 143 VIPHPRVPQLPPRHIHL 193
           V PH R    P +H H+
Sbjct: 42  VHPHWRAFPAPGKHFHI 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,048
Number of Sequences: 438
Number of extensions: 1368
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)