Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26l11
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    32   0.091
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    29   0.64 
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    28   1.5  
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    27   2.0  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    27   2.6  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.4  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    26   6.0  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      26   6.0  
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    26   6.0  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   6.0  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    26   6.0  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   7.9  

>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 22/87 (25%), Positives = 42/87 (48%)
 Frame = +1

Query: 427 DSSRVEVTSEQTLVVNLALVIYHALDYTHAEDEERLISPDLEGLITEMTSCDLVDDDEEC 606
           D++++  +S + L  N +L    + D    E   +L+SPD E  +    +  + +++   
Sbjct: 36  DTTQLSGSSSEPLENNSSLT--RSTDDPSVEIRSKLVSPDNEANLLSDQNITISNENNNE 93

Query: 607 GALSEGSETSEGGRADTDDEGIERDSE 687
              +E +ETS G  A  DDE    D++
Sbjct: 94  NDTTEEAETSSGNEA-ADDEDSSSDAQ 119


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 699  PGSRLRVPFYTLVVGV-GASTFRRL 628
            PGSR+R PF +LVV + G +T R L
Sbjct: 986  PGSRIRPPFRSLVVSINGLATIRTL 1010


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -1

Query: 198 RPAGRSGNTLAHHRAQPAGQ-RPSILTYNVHNTTPIVPH 85
           +PA  S N  AHH   P+G   PS      ++T    PH
Sbjct: 124 KPAAVSPNPAAHHAELPSGSVPPSASVSRANSTATTTPH 162


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 367 HILLHKDGNIHPSTLLHPGDDSSRVEVTSEQ 459
           H  ++KDG +  S L  PGDD +  E +SE+
Sbjct: 80  HPNVYKDGTVCISILHAPGDDPNMYESSSER 110


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 326 LRTETPVTW*PSLSISCYIKMGIYIPAPCCIQEMTAVA*RLRLNKRWW*TWPS*YTM 496
           L   TP  W P   +  Y   G  I  P C++        L LN+R+  +WPS  T+
Sbjct: 112 LSINTPAQW-PEKEV--YSLQGTSIFNPVCVKRKILQQEWLSLNQRYSDSWPSKITL 165


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 661 RRCRRVHLQTSPSPRTARRILHRH 590
           R CR  HL   P   T   +LHRH
Sbjct: 134 RLCRHKHLLDIPDQTTLSSLLHRH 157


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = -1

Query: 240 LLEADAVRSVQRELRPAG-RSGNTLAHHRAQPAGQRPSILTYNVHN-----TTPIVPHFY 79
           +LE + + +VQ E+   G  SGN        P  +  +    +  N     ++P+V H  
Sbjct: 19  VLENETIFNVQEEMEEDGSESGNIQKTLLEDPCPENVNDENEDEQNRSSRSSSPLVKHEQ 78

Query: 78  SHKNFSQKYIVNVFLLS 28
            H+ ++ K ++  F+L+
Sbjct: 79  RHRMYNLKEVIKSFILT 95


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = +1

Query: 502 DYTHAEDEERLISPDLEGLITEMTSCDLVDDDEECGALS-------EGSE-TSEGGRADT 657
           D+    D ERL     +GL  +    D  DD+++ G  S       EG E T++    D 
Sbjct: 88  DFIENGDAERLAH---KGLRNKEVLNDDSDDEDDNGKYSKLRYEDIEGQEDTNQANDLDA 144

Query: 658 DDEGIERDSEPAPRR 702
           D+EG E     +P+R
Sbjct: 145 DEEGSEISVPSSPKR 159


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 205 TLNASNCISLQQILEAFNSSISE 273
           T+ ASN IS+ QIL A  SS+ E
Sbjct: 509 TVIASNLISVDQILRAGRSSLKE 531


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 565 EMTSCDLVDDDEECGALSEGSETSEGGRADTDDEGIERDSEPAPR 699
           E+T+   +DDDE      +G +  +  + + DDE  E +S   P+
Sbjct: 88  ELTAVTELDDDEFDYKPKKGKKGKKSKKVEEDDEPQEIESPQGPK 132


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 385 DGNIHPSTLLHPGDDSSRVEVTSEQTLVVNLALVI 489
           +GN++  TL +P D S   +  + Q + + +A VI
Sbjct: 801 EGNVYSVTLYNPSDGSDFSDCINAQLVALGMASVI 835


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 691 PAPSPVLYPRRRCRRVHLQTSPSPRTAR 608
           P P+P      R   +H   SPSPR+ R
Sbjct: 329 PLPAPTSSQSLRLGSLHRSRSPSPRSGR 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,341
Number of Sequences: 5004
Number of extensions: 59580
Number of successful extensions: 201
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)