Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26l09
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    28   1.7  
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   2.3  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    27   3.0  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    27   3.0  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    27   4.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.0  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   7.0  

>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +2

Query: 299 KTGAGVTGSRTGHASEKDSDNLPSGAVSPGLLRHIHNAARYRLP--QCFEGACVSVNQNS 472
           + G+ +    T H S  DS  L  G  S  ++R +  A +  +     FE   ++     
Sbjct: 301 RLGSSILSIATSHDS--DSYALHLGDNSLVVIRAVDLAEQIHVSGINSFESKYLTSTGPK 358

Query: 473 NTNWVLGHSLSFSSVSPGGYKVLLS 547
           NT+  L   + FSSVSP G  +L+S
Sbjct: 359 NTSKQLQGLVQFSSVSPNGELLLMS 383


>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 23  LYEYHHKSRNNLNNYKQMDQEQNKFSLL 106
           L  YHH ++ +++ YK + +E+ K  LL
Sbjct: 12  LSAYHHTAKQSIDKYKSVLEEERKKQLL 39


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 152 SNPCSEANSPRKVSQSPPIDKCAGGDAPPQRKCTCSVSEDAKSTAGNRGK 301
           SN      S  + S S  + + A G APP    + ++SE+AK+      K
Sbjct: 91  SNNAPADTSVPQSSYSNSVPEAAYGSAPPSTFASSAISEEAKNACKGDAK 140


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 123 LVFLNIFMQKVILVPKRIHQEKYHKVHRLINVPEETHRLKGNALAVYL 266
           LV    ++ +  L  ++IHQ K H +   +  P+E +  K  +L +YL
Sbjct: 223 LVTFRYYLGRCHLYQRKIHQAKDHLLFSFLQCPDECYHQKRLSL-IYL 269


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 591 ITKYGRAEGLLLSMYDNSTL*PPGETELNDSE 496
           IT YG      LS+Y +    PP    +ND E
Sbjct: 192 ITSYGLVNDAWLSVYPDQVEHPPNRFSMNDKE 223


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 666 TTVARVPCVGPTRTSQLI*PPGAASITKYGRAEGLLLSMYDNST 535
           +T    P V PT TS    PP  AS +  G +   LLS   + T
Sbjct: 351 STTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCT 394


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 676 YLSHNCSTCALCGPHTHFTAHLTS 605
           +L   C  CA C  H  F  HL S
Sbjct: 8   HLKSRCYVCAKCKTHLAFKGHLLS 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,036
Number of Sequences: 5004
Number of extensions: 67998
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)