Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26l05
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    27   6.3  

>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 86  IMKNCGLGNFCADGLNCPCI 145
           +  +CG GN+CA    C C+
Sbjct: 28  VSTDCGTGNYCAGNKRCACL 47


>Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical
           protein F08A10.2 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 319 LFIFFPLYHLEFFYDPENKTIGLSHRLGEH 230
           LFI FP+Y   + Y+ +N  + L H +  H
Sbjct: 30  LFIMFPIYVYVYRYNDKNDKMALFHPITSH 59


>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 217 LINFNAHLVYARVQWSYFPGRR 282
           ++N+N+ +VY+ + WS+F   R
Sbjct: 75  MVNYNSFIVYSALPWSHFAACR 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,676,217
Number of Sequences: 27780
Number of extensions: 122321
Number of successful extensions: 243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)