Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26k14
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    30   0.24 
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    29   0.73 
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    27   2.2  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    25   6.8  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   9.0  

>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
 Frame = +3

Query: 207 LELTLL*KYKILTRSRPSEGKEKFYYLL-----TRSFCTRSFLQTVDLWNEL*QIWHYKI 371
           LE TLL   K + R     G EK +Y++      R  C RS ++  D+WN+L  +++ K 
Sbjct: 36  LEETLL--LKAICRGLRPVGIEKNFYMIGILREIRDGCKRSTIKAQDVWNKLGTLYNLKE 93

Query: 372 QKLLNSTMQFASESTSIERKRISA 443
            + L +     +E    + KRI +
Sbjct: 94  FEELEAP---GNEEVKAKEKRIKS 114


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 432 RISAMYNADQSQFQVMSSRSRSFHEPTTCIF*TTLNSNGK*HCRRKASRTLDTDSV 599
           RI + +++ Q  FQ  SS S + H PT     T+LN N   H R  +S +    S+
Sbjct: 27  RIFSSFSSSQKLFQRRSSGSIT-HSPTALSSTTSLNENDGNHFRPASSLSFSPSSL 81


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 607 YKRTESVSNVRDAFLLQC-YLPLEFNVVQKIHVVGSWND 494
           + R  +  N R  F     +LPL F +    H++  WND
Sbjct: 332 FYRNRNYQNARSLFFASLLHLPLLFTLTLACHMIKVWND 370


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 185 SLKYNNGVRIDFTLKI*DFNSIKTIRRQG 271
           SL  +  V +DF   + D+N+IK + R G
Sbjct: 20  SLNVHQEVAVDFDRDLSDYNTIKGVYRNG 48


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 426 RKRISAMYNADQSQFQVMSSRSRSFHEPT 512
           RKRI  M+   Q +  ++ +++ S H+P+
Sbjct: 15  RKRIPVMFQRAQQKSSLLHTQNESSHQPS 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,709
Number of Sequences: 5004
Number of extensions: 41966
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)