Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26k14
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0024 + 11736659-11736831,11737840-11737972                       29   3.0  
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139...    27   9.2  

>01_03_0024 + 11736659-11736831,11737840-11737972
          Length = 101

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 612 EDINA-QNLCLTFVMLFSCNVIYRWNLTSFRKYMLWV 505
           E INA Q+L LT  +L  CNV + W      + M W+
Sbjct: 23  EIINASQHLILTLQLLRGCNVTHEWPGPESNQLMNWI 59


>04_04_0909 -
           29312875-29313135,29313235-29313556,29313676-29313923,
           29314032-29314259
          Length = 352

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = -3

Query: 601 RTESVSNVRDAFLLQCYLPLE 539
           RTE VSN RD   L CY PLE
Sbjct: 126 RTEKVSNWRDFLRLHCY-PLE 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,726,465
Number of Sequences: 37544
Number of extensions: 215951
Number of successful extensions: 411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)