Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26k14
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          31   0.012
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      31   0.012
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.2  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   4.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.8  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +3

Query: 255 PSEGKEKFYYLLTRSFCTRSFLQTV--DLWNEL*QIWHYKIQKLLNSTMQFASESTSIER 428
           P E + + YY L +   TR FL+ +  DL       W+  I     ST+ +++  T  +R
Sbjct: 253 PKEIRGQLYYFLHKQLMTRYFLERMSNDLGKTAEFDWNKPINSGFYSTIMYSNGVTFPQR 312

Query: 429 KRISAM 446
            R S++
Sbjct: 313 NRFSSL 318


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +3

Query: 255 PSEGKEKFYYLLTRSFCTRSFLQTV--DLWNEL*QIWHYKIQKLLNSTMQFASESTSIER 428
           P E + + YY L +   TR FL+ +  DL       W+  I     ST+ +++  T  +R
Sbjct: 253 PKEIRGQLYYFLHKQLMTRYFLERMSNDLGKTAEFDWNKPINSGFYSTIMYSNGVTFPQR 312

Query: 429 KRISAM 446
            R S++
Sbjct: 313 NRFSSL 318


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 240 KSYIFKVKSILTPLLYFRLYFKIAFTLL 157
           K+YI+ +KS +   L F ++  + F  L
Sbjct: 44  KAYIYTIKSNMAKTLQFDVHMMLQFRYL 71


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 396 QFASESTSIERKRISAMYNADQSQFQVMSS 485
           Q +   T+ + +++S  Y AD++ FQV  S
Sbjct: 72  QGSDSYTAPDGQQVSITYVADENGFQVQGS 101


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 572 ITNVRHRFCAFIS 610
           +T+ RHR C F++
Sbjct: 170 VTHPRHRLCVFVA 182


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 461 KSISSDVFP*QIVP*THNMYF 523
           K + + V+   + P THN+Y+
Sbjct: 246 KEVDNKVYGMALSPVTHNLYY 266


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 423 ERKRISAMYNADQSQ 467
           E KR+S   N DQSQ
Sbjct: 794 EDKRLSKSVNGDQSQ 808


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,205
Number of Sequences: 438
Number of extensions: 3062
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)