Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26k11
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF083232-1|AAD03690.1|  392|Caenorhabditis elegans nuclear recep...    31   1.0  
AF016438-10|AAK84533.2|  394|Caenorhabditis elegans Nuclear horm...    31   1.0  
Z81089-1|CAB03135.2|  957|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical...    29   4.2  
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified vi...    28   7.3  
U64599-1|AAB04560.3|  426|Caenorhabditis elegans Unidentified vi...    28   7.3  
U58754-2|AAB00671.1|  391|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF083232-1|AAD03690.1|  392|Caenorhabditis elegans nuclear receptor
           NHR-18 protein.
          Length = 392

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 457 RQLLDSATCHKYFYVTFNCGQC--VSCM*IGRDVSRCCLFQHKRISESCEPLRSPLS 293
           +++  + TCH      FNC QC    C+ +G D  R   FQ  R   SC  +   L+
Sbjct: 43  KRICPNGTCHTSVNGKFNCKQCRLKKCLDVGMDTRR---FQTDRDLISCSAISQSLA 96


>AF016438-10|AAK84533.2|  394|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 18 protein.
          Length = 394

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 457 RQLLDSATCHKYFYVTFNCGQC--VSCM*IGRDVSRCCLFQHKRISESCEPLRSPLS 293
           +++  + TCH      FNC QC    C+ +G D  R   FQ  R   SC  +   L+
Sbjct: 45  KRICPNGTCHTSVNGKFNCKQCRLKKCLDVGMDTRR---FQTDRDLISCSAISQSLA 98


>Z81089-1|CAB03135.2|  957|Caenorhabditis elegans Hypothetical
           protein F53H4.1 protein.
          Length = 957

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 469 FIYPRQLLDSATCHKYFYVTFNCGQCVSC 383
           F++P +L DSAT H+ F    N G  ++C
Sbjct: 383 FVHPGRLSDSATFHRNFTHIINAGANLNC 411


>AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical
           protein Y50D7A.10 protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 675 AWLESHSDRRLRYPVYPATETISGMQPPLFLLIAMS 568
           +W + HSD R+ YP+       +G  P L +L A S
Sbjct: 72  SWCKKHSDERISYPMLLIYYCPNGSSPELQMLYAGS 107


>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
           protein C27B7.7 protein.
          Length = 1471

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -1

Query: 308 PKSVEQNLARLRRS--VIAPRRTLAIQC-GRSESHPTASAHITQLREN 174
           P SVE +L  +  +  V+ PR TL+IQC  R +  P+ S  I+  R+N
Sbjct: 440 PISVESDLFGVSATTMVVNPRETLSIQCTARGKPRPSISVAISD-RKN 486


>U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 6, isoform b
           protein.
          Length = 420

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -3

Query: 477 TLCLFTHGSCLTAQRVTNIFM*LLTAASALVVCRSVVTSRAVACFSTSVYL 325
           T+C   HG+  T +  + +F+ LL A   + +C+S +  R    + T+++L
Sbjct: 79  TICHLFHGTEATGKYASVLFVVLLAADRYIAMCKSDLCGR-YRTYRTAIFL 128


>U64599-1|AAB04560.3|  426|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 6, isoform a
           protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -3

Query: 477 TLCLFTHGSCLTAQRVTNIFM*LLTAASALVVCRSVVTSRAVACFSTSVYL 325
           T+C   HG+  T +  + +F+ LL A   + +C+S +  R    + T+++L
Sbjct: 79  TICHLFHGTEATGKYASVLFVVLLAADRYIAMCKSDLCGR-YRTYRTAIFL 128


>U58754-2|AAB00671.1|  391|Caenorhabditis elegans Hypothetical
           protein C39H7.4 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 666 ESHSDRRLRYPVYPATETISGMQPP 592
           E+  D  +R   YPAT  + G+QPP
Sbjct: 140 ENPRDDFIRLSEYPATSAVIGLQPP 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,067,124
Number of Sequences: 27780
Number of extensions: 303560
Number of successful extensions: 731
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)