Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26k09
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.59 
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    27   2.4  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    27   3.1  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   5.5  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   5.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.2  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.5  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    25   9.5  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 331 QSNPSQPQESHQSPLRILFVKTLNRCQYISRALFKLRYSWPTHHIVNSELE 179
           +S PSQP  S    LR  F+++ +   Y+   LF   YS+    + N+ L+
Sbjct: 14  ESLPSQPTVSSFQQLRETFIQSKSEDWYLKNGLFFRYYSFLKSSLENATLD 64


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 389 NVREHLNVCFPREWIGRGGPVLW 457
           ++R+HL VC  +   G+GG V W
Sbjct: 128 DLRDHLRVCSLKRNRGKGGAVTW 150


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 359 HDGAPAHFARNVREHLNVCF 418
           ++G P   A+N REH N CF
Sbjct: 56  YEGEPHEVAQNFREHGNECF 75


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 357  SMMELRHILLATYENILTFAFRE 425
            S  +L H++L  + ++LT+AF E
Sbjct: 1268 SKFKLNHLVLELWSDVLTYAFNE 1290


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 442 PAADPFSRKANVKMFSYVASKMCRSSIML 356
           P  DPFS +        +ASK CRSS+M+
Sbjct: 729 PQIDPFSSRLE----RMLASKACRSSVMI 753


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +3

Query: 357  SMMELRHILLATYENILTFAFRE 425
            S +E+RH++ ++++NI ++ F E
Sbjct: 1825 SPIEVRHLVKSSFDNIFSYIFSE 1847


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 247 CIGNDLTFLQTEFEEAIDDFPVAGWDYFED 336
           C  N + +L+ E+E  +  F ++  +++ED
Sbjct: 318 CFSNAMNYLEHEYETLVSTFTLSVSEHWED 347


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
            Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 238  LAKC-IGNDLTFLQTEFEEAIDDFPVAGWDYFEDQKKHGV 354
            L KC + N   F  +E+EE I+    A +D   DQ+   V
Sbjct: 1143 LEKCALSNQSAFDSSEYEERINSAVAATYDVTYDQRVKSV 1182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,338
Number of Sequences: 5004
Number of extensions: 59213
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)