Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26k09
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0007 - 13641012-13641431,13642220-13642312,13642429-136425...    30   1.9  
12_01_0556 - 4514686-4514868,4515168-4515290,4515381-4515617,451...    29   2.4  
08_02_1616 + 28260204-28262555                                         29   2.4  
08_02_0472 - 17573865-17574034,17575145-17575229,17575339-175754...    28   5.6  
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368...    28   7.5  
01_01_0636 + 4799257-4799640,4799758-4800011,4800646-4800998,480...    28   7.5  

>09_04_0007 -
           13641012-13641431,13642220-13642312,13642429-13642521,
           13642607-13642671,13643495-13643565,13643644-13643682,
           13644709-13645121
          Length = 397

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 356 QHDGAPAHFARNVREHLNVCFPREWIGRGG 445
           +H G   HFA+ + +H    +  +WIG GG
Sbjct: 149 EHSGRYNHFAKLLNDHGLKVYAMDWIGHGG 178


>12_01_0556 -
           4514686-4514868,4515168-4515290,4515381-4515617,
           4515747-4516358
          Length = 384

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 570 DRFSHQ*HRRWCEMPHKPYPDE 635
           DR      + +CEMPH PYP++
Sbjct: 48  DRLKLHLAKEFCEMPHMPYPED 69


>08_02_1616 + 28260204-28262555
          Length = 783

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +2

Query: 245 NVLATI*RFYKQNSKRRLMTFLWLAGITLRTKRNMVFQHDGAPAHFARNVREHLNVCFPR 424
           +VLA + RFY+ NS R L+    L    LR+ R  +      P  FA  +  H N+ + R
Sbjct: 566 SVLALVQRFYEPNSGRVLLDGRDLRKFNLRSLRRAMALVPQEPFLFAATI--HDNIAYGR 623

Query: 425 E 427
           E
Sbjct: 624 E 624



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 341 FWS-SK*SQPATGKSSIASSNS-VCKNVKSLPIHFASTI*IAIFMAYASYRKLRVRKHCY 168
           FW  +K + P  G + +AS  S VC +  ++  +  S +    +   A+Y   ++ K+CY
Sbjct: 185 FWRLAKMNSPEWGYALVASLGSMVCGSFSAIFAYVLSAVLSVYYAPDAAYMDRQIAKYCY 244


>08_02_0472 -
           17573865-17574034,17575145-17575229,17575339-17575461,
           17575566-17575707,17575789-17575889
          Length = 206

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -3

Query: 373 RSSIMLKHHVSFGPQSNPSQPQ-ESHQSPLRILFVKTLNR-CQYISRALFKLRYSWPTHH 200
           RSS   +  +S+ P S PS         P  + ++ ++NR      + +FK + SWP + 
Sbjct: 67  RSSAWYEVKISY-PASIPSSFSIRLVDDPHSVEYLGSMNRRLLNTEKIIFKAQNSWPVYV 125

Query: 199 IVNSELESIVILQKITE 149
           +V  E E +V    + E
Sbjct: 126 LVTVEPEGVVAKPNVPE 142


>05_07_0310 +
           29135875-29136052,29136206-29136617,29136723-29136867,
           29137944-29138102,29138183-29138242,29138349-29138546
          Length = 383

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 371 PAHFARNVREHLNVCFPREWIGRGGP 448
           PA  A+ VRE  N   PR+  GRGGP
Sbjct: 53  PAPPAQAVREARNYGAPRDGAGRGGP 78


>01_01_0636 +
           4799257-4799640,4799758-4800011,4800646-4800998,
           4801121-4801137
          Length = 335

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 520 SVFLRLPNGCRDETAC*IGFRINNTDDGAKCHTSPIP 630
           S FL       +E A  +G ++  T+DG K    PIP
Sbjct: 200 STFLTKDKSIAEERAAKLGMKLEWTEDGVKTIMGPIP 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,081,338
Number of Sequences: 37544
Number of extensions: 386938
Number of successful extensions: 1007
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)