Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26k09
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   4.5  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   4.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.0  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   6.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 402  ILTFAFRENGSAAGDRCYGLLVLRA 476
            +L F FRE+  A     YGL  LRA
Sbjct: 1013 VLAFVFRESVGAWAYSKYGLRFLRA 1037


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 110 NIFFPTLHFFKPVLEYNHILVLR 42
           ++F    HF  P  E+NH  V+R
Sbjct: 289 SLFVVIFHFAHPREEFNHWTVMR 311


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -3

Query: 199 IVNSELESIVILQKITETAVGYRLEDLKLTIF 104
           +++++L+ I ILQ I +  + YR+  L L+IF
Sbjct: 44  VMDTKLKIIEILQFILDVRLDYRISCL-LSIF 74


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -3

Query: 199 IVNSELESIVILQKITETAVGYRLEDLKLTIF 104
           +++++L+ I ILQ I +  + YR+  L L+IF
Sbjct: 12  VMDTKLKIIEILQFILDVRLDYRISCL-LSIF 42


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 238 LAKCIGNDLTFLQTEFEEAIDDFPVAGWDYFEDQKKHGVS 357
           L K    +L F     E    D  +  +D+FE    +GVS
Sbjct: 435 LPKYTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVS 474


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 468 ERAGHSTGPPRPIHSRGKQTLRC 400
           E+A H++     +HS   +TL C
Sbjct: 606 EQAAHASASEESVHSMELRTLPC 628


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 238 LAKCIGNDLTFLQTEFEEAIDDFPVAGWDYFEDQKKHGVS 357
           L K    +L F     E    D  +  +D+FE    +GVS
Sbjct: 435 LPKYTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVS 474


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 468 ERAGHSTGPPRPIHSRGKQTLRC 400
           E+A H++     +HS   +TL C
Sbjct: 574 EQAAHASASEESVHSMELRTLPC 596


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 238 LAKCIGNDLTFLQTEFEEAIDDFPVAGWDYFEDQKKHGVS 357
           L K    +L F     E    D  +  +D+FE    +GVS
Sbjct: 61  LPKYTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVS 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,986
Number of Sequences: 438
Number of extensions: 4012
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)